UFO05426.5prime Sequence
1097 bp (972 high quality bases) assembled on 2009-07-06
> UFO05426.5prime
CAGTCGACATGTCATCGGCTATATACCTAGAGAACTATTTAGACGGATTG
GAAAGTCTGCCAACGGAGCTGGAGAGAAATTTTAAGCTGATGCGAAAATT
AGACGATCGAGCACAAACAGCGATGAAGAGCATCGATAGCCATGCCAAGG
ACTTTATGCGCAAGCTGGGCGAGAACGGGGCCATGAGCGAGGATGAGAGG
AGGGAGCGCCAGGAGGATATCAAGGCACTGTTCGGAAAGGCCAAGGAGTA
CAGCGACGACAAGGTGCAGCTGGCCATTCAGACCTACGAACTAGTGGACA
AGCAGATACGGCGACTGGACAACGATTTAGCACGCTTCGAGGGTGAGATT
CAGGAGAAGGCCTCATCCACGCGTGCCAAATCCGAGGAAGTGGTGGCCAA
GAAAGGTCGCAAAAAAACCAAGGACAGCAAGACGACGGGCAAAAAGAAAA
AGTCCGCATCCTCGGATGAGGAAACTGGGCGCGGCAACAACCAATCTAAC
GCCAATTCCAGTGTCAATTCGAGCAGCAATGCCGGGCAAGGTAGCAAAAA
GAAAAAGTCCAAGGTAAATCAAGAAAAAGAAACTCGCAAGGGGGGCGCTC
AAAAGAAAACCGTCGAGGTTGATGACTCTGAGAAGGAATCGTGCCACACG
GCCGCCACTCATCCCAGCGACGTTATGGACATGCCCGTCGATCCCAATGA
GCCCACATATTGCCTATGCCACCAGGTGTCCTATGGAGAGATGATTGGCT
GCGACAATCCCGACTGTCCCATCGAGTGGTTTCACTTCGCTTGTGTTGGC
CTCACCACAAAGCCAAAGGGCAAGTGGTTCTGTCCCAAGTGTACGCAGAC
AGAAAGAGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATATCACACTAGCCTAG
GAGATCTGGTCATGACTAGTGCTGATCTCCCCAATAAAAAACGCCCGGCG
GCACCGGGCGTTCTGAACAATTCCGGATGGGAGTTCTGAGGTCATTACTG
ATCTATCAACAGGATCAGCGAGCTCGAATTCAATACGCCCGCCTGCA
UFO05426.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9293-RA | 1044 | CG9293-RA | 100..949 | 9..857 | 4225 | 99.9 | Plus |
| CG9293-RB | 1002 | CG9293-RB | 100..654 | 9..563 | 2775 | 100 | Plus |
| CG9293-RB | 1002 | CG9293-RB | 652..907 | 603..857 | 1255 | 99.6 | Plus |
| Ing3-RA | 2298 | CG6632-RA | 1997..2149 | 689..841 | 210 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13386757..13387114 | 402..45 | 1790 | 100 | Minus |
| 2L | 23513712 | 2L | 13386488..13386690 | 605..403 | 1015 | 100 | Minus |
| 2L | 23513712 | 2L | 13386099..13386259 | 764..604 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 13385953..13386036 | 848..765 | 420 | 100 | Minus |
| X | 23542271 | X | 18650867..18651019 | 841..689 | 210 | 75.8 | Minus |
| 2L | 23513712 | 2L | 13387176..13387213 | 46..9 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:28 has no hits.
UFO05426.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:30 Download gff for
UFO05426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9293-RA | 79..940 | 1..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:43 Download gff for
UFO05426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9293-RA | 92..953 | 1..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:57 Download gff for
UFO05426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9293-RA | 92..953 | 1..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:57 Download gff for
UFO05426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13385938..13386036 | 765..864 | 96 | <- | Minus |
| 2L | 13386099..13386257 | 606..764 | 100 | <- | Minus |
| 2L | 13386488..13386690 | 403..605 | 100 | <- | Minus |
| 2L | 13386757..13387113 | 46..402 | 100 | <- | Minus |
| 2L | 13387177..13387221 | 1..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:43 Download gff for
UFO05426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13385938..13386036 | 765..864 | 96 | <- | Minus |
| arm_2L | 13386099..13386257 | 606..764 | 100 | <- | Minus |
| arm_2L | 13386488..13386690 | 403..605 | 100 | <- | Minus |
| arm_2L | 13386757..13387113 | 46..402 | 100 | <- | Minus |
| arm_2L | 13387177..13387221 | 1..45 | 91 | | Minus |
