UFO05427.5prime Sequence
1120 bp (1029 high quality bases) assembled on 2009-07-06
> UFO05427.5prime
CAGTCGACATGGCACAATTCACACTCTACAACAAACACAGTGCGCCGCCC
AGTAGCGAGAGTACGCGTGTGGACTGCGAACACGTACCGCTGTGCTCGAT
TAACGATGTGCAGCTAAGGTTCCTGGTGCCCGACGATCTGACGGAGGTGC
GACAGCTGTGCCAAGAATGGTTTCCAATCGACTATCCACTATCATGGTAT
GAGGATATTACCTCAAGCACGCGCTTCTTTGCGCTGGCAGCTGTATATAA
TCTGGCCATAATTGGTTTAATCGTTGCCGAAATCAAACCCTATCGAAATG
TGAACAAGGAGGTAATAGCCAATATGAGTGATAGTGATGAGTTGTACACC
AGGCTGAGCGGTTTTCCCATGCAGGACAAGGGCATCCTGCCGGACTCGAT
GGGTCGTTCCGCCGATGTCGGTTATATACTGTCGCTGGGCGTCCATCGTT
CGCATCGACGCAATGGCATCGGATCGCTGCTGTTGGACGCGCTAATGAAC
CACCTGACGACGGCCGAGCGGCATTCGGTGAAGGCGATCTTCCTGCACAC
GCTGACCACCAATCAACCTGCCATATTTTTCTACGAGAAGAGAAGATTTA
CGCTTCACTCATTCCTGCCCTACTACTACAATATACGGGGCAAGGGCAAG
GACGGATTCACCTATGTGAACTACATTAACGGCGGCCATCCACCCTGGAC
TTTATTAGATCACATCAAGCACTACGCGTCGATGGTGCGCCACACCAGCA
GCCTTTGCGCCTGGCTGGCCGGACGAGTCCAGCAGGTGGTGCGGTGGTTC
TACCACAAGCTGCTCACTCGCTTCAACTTTATCGAGGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCCCCAATAAAAAACGCCGGCGGCAACCGAGCGTTCTGAACA
ATTCAGATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCAGCG
AGCTCGATATCAATTAGTCGCTGCATCATGGAGTACTGTTGTAATTCATT
AAGCATTCGGCGCACTGAAG
UFO05427.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Naa60-RA | 2294 | CG18177-RA | 659..1486 | 9..836 | 4140 | 100 | Plus |
| Naa60-RB | 2231 | CG18177-RB | 960..1423 | 373..836 | 2320 | 100 | Plus |
| Naa60-RC | 1378 | CG18177-RC | 960..1298 | 373..711 | 1680 | 99.7 | Plus |
| Naa60-RB | 2231 | CG18177-RB | 659..962 | 9..312 | 1520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9727983..9728433 | 145..595 | 2255 | 100 | Plus |
| 3L | 28110227 | 3L | 9728713..9728842 | 707..836 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 9727787..9727909 | 26..148 | 615 | 100 | Plus |
| 3L | 28110227 | 3L | 9728502..9728619 | 594..711 | 575 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:50 has no hits.
UFO05427.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:31 Download gff for
UFO05427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18177-RA | 617..1458 | 1..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:07 Download gff for
UFO05427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Naa60-RA | 652..1493 | 1..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:35 Download gff for
UFO05427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Naa60-RA | 652..1493 | 1..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:35 Download gff for
UFO05427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9727787..9727907 | 26..146 | 100 | -> | Plus |
| 3L | 9727985..9728433 | 147..595 | 100 | -> | Plus |
| 3L | 9728504..9728616 | 596..708 | 99 | -> | Plus |
| 3L | 9728715..9728849 | 709..843 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:07 Download gff for
UFO05427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9720887..9721007 | 26..146 | 100 | -> | Plus |
| arm_3L | 9721085..9721533 | 147..595 | 100 | -> | Plus |
| arm_3L | 9721604..9721716 | 596..708 | 99 | -> | Plus |
| arm_3L | 9721815..9721949 | 709..843 | 97 | == | Plus |
