UFO05428.5prime Sequence
1059 bp (932 high quality bases) assembled on 2009-07-06
> UFO05428.5prime
CAGTCGACATGTTCCGCTACATGCTCGTCGCCTCCGCCGTCCTGGCCTGC
GCCTACGGTGCCGCCACCTACAACCAGGAAGCTGGTGCCTACATCACCAA
GATCGGCTCCGACATCCAGCCCGAGGGCAACTACAACTACCAGTACGAGA
CCAGCAACGGCATCGCCGCCCAGGAGTCCGGAATTGGTGGAAACCACGCC
AACGGAGGCTTCTCGTGGTACTCGCCAGAGGGTGAGCTCGTCCAGATCTC
GTACGTGGCCGACGAGAACGGCTACCAGCCACAGGGAGCTCTCCTGCCCA
CTCCTCCCCCAATCCCAGCTGCCATCCTTAGGAGCTTGGAGTACATCCGT
ACCCATCCCCAGTATGTCGAGCAGGAGTACCGCAGGCCCGCCCTCAAGAA
GGTCTTTGGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGC
ATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGG
GGCGAAGAAGTTGTAGATATTGGCCACGTTTAATCAAACTGGTGAAACTC
ACCCAGGGATTGGCTGAGACGAAAAACATATCTCATAAACCCTTTAGAAA
TAGCAGTTTTCACGTACACGCCACATCTGCGAATATATGTGTAGAACTGC
GAAATCGTCTGTATTCACTCGAGCGATGAAACGGTTCAGTGGCTCATGGA
ACGTTGCCAGGTGAACTTTCATTCCCAGCTCACGTCTTCATGCATCGATT
CCGATGACA
UFO05428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr67Fa2-RA | 565 | CG18349-RA | 55..456 | 9..410 | 2010 | 100 | Plus |
| Cpr67Fa1-RA | 554 | CG7941-RA | 60..461 | 9..410 | 1800 | 96.5 | Plus |
| Lcp4-RB | 527 | CG2044-RB | 274..345 | 257..328 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10892014..10892407 | 17..410 | 1955 | 99.7 | Plus |
| 3L | 28110227 | 3L | 10890219..10890607 | 22..410 | 1750 | 96.7 | Plus |
| 2R | 25286936 | 2R | 8437977..8438048 | 257..328 | 225 | 87.5 | Plus |
| 2R | 25286936 | 2R | 8435769..8435840 | 257..328 | 210 | 86.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:31:27 has no hits.
UFO05428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:33 Download gff for
UFO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67Fa2-RA | 18..430 | 1..414 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:03 Download gff for
UFO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67Fa2-RA | 47..459 | 1..414 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:48 Download gff for
UFO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67Fa2-RA | 47..459 | 1..414 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:48 Download gff for
UFO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10892018..10892407 | 21..410 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:03 Download gff for
UFO05428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10885118..10885507 | 21..410 | 100 | == | Plus |
