UFO05429.5prime Sequence
1112 bp (969 high quality bases) assembled on 2009-07-06
> UFO05429.5prime
CAGTCGACATGTTCAAGTTTGTCATGATCTGCGCAGTTTTGGGCCTGGCG
GTGGCCAACCCCCCGGTGCCCCATTCCCTAGGCCGTTCGGAGGATGTCCA
CGCCGATGTCCTTTCCCAATCCGATGATGTTCGTGCCGATGGATTCGATT
CCAGCCTGCACACCTCCAACGGAATCGAGCAGGCCGCCAGCGGTGATGCC
CATGGCAACATCCACGGCAACTTCGGCTGGATCTCACCCGAGGGCGAGCA
CGTCGAGGTTAAGTACGTCGCCAATGAGAACGGATACCAGCCCTCGGGAG
CCTGGATCCCCACTCCTCCTCCAATCCCAGAGGCCATCGCCCGCGCCGTC
GCCTGGCTGGAGTCCCACCCACCAGCACCCGAGCACCCCCGTCATCACGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT
GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGAT
TGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGAAATAGGCCA
GGTTTCACCGTAACACGCACATCTTGCGAATATATGTGTAGAACTGCGGA
AATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTGCTCATG
GAAAACGGTGTAACAGGGTGAACACTATCCCAATATCACCAGCCTCACCG
TCTTCCATGCATACGAAATCGGAATGAAACATCATCACGCGGGCAGAATG
GATAAGCGATAA
UFO05429.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp1-RB | 1065 | CG11650-RB | 43..432 | 9..398 | 1950 | 100 | Plus |
| Lcp1-RA | 543 | CG11650-RA | 43..432 | 9..398 | 1950 | 100 | Plus |
| Lcp2-RB | 927 | CG8697-RB | 315..630 | 83..398 | 1295 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8430748..8431125 | 398..21 | 1890 | 100 | Minus |
| 2R | 25286936 | 2R | 8434094..8434409 | 398..83 | 1295 | 94 | Minus |
| 2R | 25286936 | 2R | 8433018..8433250 | 328..100 | 270 | 76.4 | Minus |
| 3L | 28110227 | 3L | 10890418..10890523 | 233..338 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:24:56 has no hits.
UFO05429.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:34 Download gff for
UFO05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 24..421 | 1..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:49 Download gff for
UFO05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 24..421 | 1..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:29 Download gff for
UFO05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp1-RA | 35..432 | 1..398 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:29 Download gff for
UFO05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8430748..8431125 | 21..398 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:49 Download gff for
UFO05429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4318253..4318630 | 21..398 | 100 | <- | Minus |
