UFO05430.5prime Sequence
1103 bp (1001 high quality bases) assembled on 2009-07-06
> UFO05430.5prime
CAGTCGACATGCTGAAGTTCCTGATCCTGTTGTCGGCTGTAGCCTGCGCC
CTGGGAGGCACCATCCCCGAGGGTCTCCTGCCCCAGTTGGATGGCCGCAT
TGTCGGCGGTACTGCTACCACCATCAGCAGCTTCCCCTGGCAGATCTCCC
TGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACTCCGCCAGG
GTGATCGTGACCGCCGCTCACTGCCTGCAGTCCGTGTCCGCCTCCTCCCT
GCAGATCCGCGCCGGATCCAGCTACTGGAGCTCTGGTGGCGTCGTCGCCA
AGGTTTCCTCTTTCAAGAACCACGAGGGTTACAACGCCAACACCATGGTC
AACGACATCGCTGTGCTCCATCTGAGCTCCTCTCTGAGCTTCAGCTCCAC
CATCAAGGCCATCGGTCTGGCTAGCTCCAACCCCGCCAACGGTGCTGCTG
CCTCCGTCTCCGGATGGGGTACCGAGTCCTCTGGCTCCAGCTCCATTCCC
TCCCAGCTGCGTTATGTCAACGTGAACATCGTCAGCCAGAGCCGGTGCTC
TTCTTCCTCCTATGGCTACGGAAACCAGATCAAGAGCTCCATGATCTGCG
CTTTTGCCAGCGGCAAGGACTCGTGCCAGGGTGACTCCGGTGGCCCACTG
GTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATACGGATGTGC
TGCCGCTAACTACCCCGGTGTCTATGCCGATGTTGCTGCCCTCCGCTCCT
GGGTGATCAACAACGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
TTACGCCCCGCCTGCCACTCATCCCCAGTTCTGGTTGTATTCATTAGCAT
TCTGGCGACTGAGCCATCACAACGCATGATGACTGATCGGCCACCGCCAT
CAG
UFO05430.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTry-RB | 1071 | CG18211-RB | 17..776 | 8..767 | 3800 | 100 | Plus |
| betaTry-RA | 813 | CG18211-RA | 17..776 | 8..767 | 3800 | 100 | Plus |
| CG30025-RA | 810 | CG30025-RA | 14..773 | 8..767 | 2465 | 88.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11346341..11347100 | 8..767 | 3800 | 100 | Plus |
| 2R | 25286936 | 2R | 11353601..11354360 | 767..8 | 2465 | 88.3 | Minus |
| 2R | 25286936 | 2R | 11349097..11349856 | 767..8 | 2405 | 87.8 | Minus |
| 2R | 25286936 | 2R | 11350826..11351585 | 8..767 | 2405 | 87.8 | Plus |
| 2R | 25286936 | 2R | 11355332..11356091 | 8..767 | 2405 | 87.8 | Plus |
| 2R | 25286936 | 2R | 11344346..11345093 | 755..8 | 2390 | 88 | Minus |
| 2R | 25286936 | 2R | 11345694..11346014 | 362..42 | 285 | 72.6 | Minus |
| 2R | 25286936 | 2R | 11345320..11345489 | 736..567 | 280 | 77.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:45 has no hits.
UFO05430.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:35 Download gff for
UFO05430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTry-RA | 1..767 | 7..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:07 Download gff for
UFO05430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTry-RA | 1..771 | 4..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:39 Download gff for
UFO05430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTry-RA | 8..781 | 1..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:39 Download gff for
UFO05430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11346332..11347105 | 1..775 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:17:07 Download gff for
UFO05430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7233837..7234610 | 1..775 | 99 | == | Plus |
