UFO05431.5prime Sequence
1104 bp (1000 high quality bases) assembled on 2009-07-06
> UFO05431.5prime
CAGTCGACATGACTGCCGAGACCCTCAAGCCGTTTATAACGCCAACGAGT
GCCAACGATGATGGTTTTCCGGCCAAAGCGACCAGCACGGCGACCGCCCA
GCGACGCACCCGCCAGCTGATCCCCCTGGTTTTGGGGTTCATCGGTCTGG
GGCTGGTCGTTGCCATTCTCGCACTAACGATCTGGCAGACAACGCGTGTA
TCGCATCTGGACAAGGAGCTGAAGAGCCTGAAGCGAGTCGTCGATAATCT
CCAGCAGCGTTTGGGCATAAACTATCTGGACGAGTTCGACGAGTTCCAAA
AGGAGTACGAGAATGCCCTCATCGACTATCCAAAAAAGGTGGATGGCCTC
ACGGATGAGGAGGACGACGACGATGGCGATGGTCTGGATTCCATTGCGGA
CGACGAGGACGACGACGTTAGCTATAGCTCTGTGGATGATGTTGGCGCAG
ACTACGAGGACTACACCGATATGTTAAATAAACTCAACAATGCACATACC
GGCACCACGCCCACATCTGAGACCACTGCTGAGGGCGAGGGCGAGACGGA
CAGTGCATCCTCAGCCTCAAATGATGACAATGTGTTCGATGACTTTACCA
GCTACAATGCCCACAAAAAGAAGCAGGAGAGAAAATCTCGCTCGATTGCC
GATGTACGCAATGAGGAGCAGAATATTCAAGGAAATCACACAGAGCTTCA
GGAAAAGTCATCCAATGAGGCAACTTCCAAAGAGAGCCCTGCACCACTTC
ACCACCGTCGCAGAATGCATTCCCGCCATCGCCACCTCCTAGTCCGCAAA
GCCAGATCCGAGGACTCGAGGCCAGCAGCCCATTTCCACTTGAGCAGCAG
CGGCGTCACCAAAGGAAGTATGGGCTACCATGGAGATATGTACATAGGAA
ATGATAACGAGAGAAACTCTTATCAGGACACTTTCAACGCGGCGATGGCG
TCTTGACGTGACCAATACAGCCTTATATTACGTAATACGCCAGAATATGC
TACAACACTCGCACGAACAGAACGGATTATCGTCTTTCAAGAAACCCTCC
ATTCCTGCATGCTGAACCCGTGCCACCAACATGCAAATAAGTCCACCTGC
CCAC
UFO05431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| egr-RB | 2148 | CG12919-RB | 647..1730 | 9..1084 | 4950 | 98 | Plus |
| egr-RA | 2166 | CG12919-RA | 647..1748 | 9..1084 | 4760 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10082640..10082967 | 304..631 | 1640 | 100 | Plus |
| 2R | 25286936 | 2R | 10079012..10079182 | 9..179 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 10081506..10081632 | 179..305 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 10083028..10083134 | 630..736 | 535 | 100 | Plus |
| 2R | 25286936 | 2R | 10083573..10083763 | 873..1059 | 480 | 90.6 | Plus |
| 2R | 25286936 | 2R | 10083260..10083326 | 735..801 | 335 | 100 | Plus |
| 2R | 25286936 | 2R | 10083420..10083494 | 800..874 | 280 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:31:37 has no hits.
UFO05431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:37 Download gff for
UFO05431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egr-RB | 640..1752 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:11 Download gff for
UFO05431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egr-RB | 639..1751 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:55 Download gff for
UFO05431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egr-RB | 639..1751 | 1..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:55 Download gff for
UFO05431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10079004..10079182 | 1..179 | 97 | -> | Plus |
| 2R | 10081507..10081632 | 180..305 | 100 | -> | Plus |
| 2R | 10082642..10082967 | 306..631 | 100 | -> | Plus |
| 2R | 10083030..10083134 | 632..736 | 100 | -> | Plus |
| 2R | 10083262..10083326 | 737..801 | 100 | -> | Plus |
| 2R | 10083422..10083493 | 802..873 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:11 Download gff for
UFO05431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5966509..5966687 | 1..179 | 97 | -> | Plus |
| arm_2R | 5969012..5969137 | 180..305 | 100 | -> | Plus |
| arm_2R | 5970147..5970472 | 306..631 | 100 | -> | Plus |
| arm_2R | 5970535..5970639 | 632..736 | 100 | -> | Plus |
| arm_2R | 5970767..5970831 | 737..801 | 100 | -> | Plus |
| arm_2R | 5970927..5970998 | 802..873 | 97 | -> | Plus |
