UFO05433.5prime Sequence
1089 bp (967 high quality bases) assembled on 2009-07-06
> UFO05433.5prime
CAGTCGACATGAGCCTAAAATTGATGGCGTTTGTCTGTGCTCTGCTGCTC
CTGTGCACCTTGACCCATGTCCTGTCGGCCGCGACCACAGTGCGTCCCTA
CAAGTTCGGCTTCACCATCGACGAGCAGCAGCATCGGGCAGAGAAGAGAG
ATGAACGCGGCATTATCATGGGCGAGTTTGGGTTCATCACCGCCGATGGT
ATCTATCACGTGACGGTCTATGCCACCGACGAGGAGGGCAAATTCCGGAT
AATCTCCATGAAGAGCTATCCTTACGCGGGTCCAGTTGGTTCAAAAAGTG
TTCCTGTGACAACGACTCCAAAGGTCCTGCTTCCTGCAGCTCCGGTGGCT
CTGCCCAAGTACAACTTCAACTCGGAGGCCTGTTCCGGTTGTTTCCTAAA
AAAGTCCCCTCCCAAGACGGAAATTCGCACACTTTCACAGCCATTGGCTC
CAGTTCAACCAGGTAAGCCCGATGGCTCTTCAGACATCGGCCTGAATGTG
CAGTTACCCTTCCGGGAATCCATTGCACAGACTGTGGCAAGTCGTCTTGG
TTTGCTCCAAGATACACTGCAAACCTCCAACACAAACACGAACGCACCAA
ACACTAAAACAATCGAACTTGGTCTCAACATAGCAATGAGCACATACTAC
ACAACAAAGAATGCTGTAACCGGACATGTGAGCACGCAGACCTCCAATTC
GCAAACTCCGAGTGCCAACACAAAGATCGACTACAATGTGGGCGTGGTCG
AGAAAGCTTCACCGCCGGTTTATCGGCCATTGAACATCCGGTTGAACGAG
GACGTTATGAGACAAGCTATTACATATGGAAACACATACCTGGCCATGTG
CCCTTGCCCAATCAGCCACTTGTTGAAACCTCATTGCTTCCAGCGAGTCA
ACACACATCCGATGCGGGCCTTAATGCAAGGTTCCACTTGCCAGTAACAT
TCAATCGGCAAGCTTTCTAGACATTCGTTTGGCGCGCGGGCCAGGTAGTG
GTCATATCATATTCATATCATATCATATCACACTAGCCTAGGAGATCTGT
CATGACTATGCCTGATTCCCACAATAAAGCCTGCGCACG
UFO05433.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)mbn-RB | 2321 | CG12755-RB | 247..1199 | 9..956 | 4455 | 98.1 | Plus |
| l(3)mbn-RD | 1568 | CG12755-RD | 247..702 | 9..464 | 2280 | 100 | Plus |
| l(3)mbn-RE | 2150 | CG12755-RE | 247..700 | 9..462 | 2270 | 100 | Plus |
| l(3)mbn-RB | 2321 | CG12755-RB | 1209..1262 | 905..956 | 220 | 96.3 | Plus |
| l(3)mbn-RB | 2321 | CG12755-RB | 1272..1325 | 905..956 | 220 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6125386..6125993 | 901..295 | 2975 | 99.7 | Minus |
| 3L | 28110227 | 3L | 6126354..6126499 | 294..149 | 730 | 100 | Minus |
| 3L | 28110227 | 3L | 6128357..6128469 | 154..42 | 550 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:53 has no hits.
UFO05433.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:39 Download gff for
UFO05433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)mbn-RC | 59..1016 | 9..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:09 Download gff for
UFO05433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)mbn-RB | 247..1140 | 9..901 | 99 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:36 Download gff for
UFO05433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)mbn-RB | 247..1140 | 9..901 | 99 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:36 Download gff for
UFO05433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6125264..6125321 | 902..956 | 94 | <- | Minus |
| 3L | 6125386..6125993 | 295..901 | 99 | <- | Minus |
| 3L | 6126354..6126497 | 151..294 | 100 | <- | Minus |
| 3L | 6128361..6128469 | 42..150 | 100 | <- | Minus |
| 3L | 6128529..6128561 | 9..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:09 Download gff for
UFO05433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6118364..6118421 | 902..956 | 94 | <- | Minus |
| arm_3L | 6118486..6119093 | 295..901 | 99 | <- | Minus |
| arm_3L | 6119454..6119597 | 151..294 | 100 | <- | Minus |
| arm_3L | 6121461..6121569 | 42..150 | 100 | <- | Minus |
| arm_3L | 6121629..6121661 | 9..41 | 100 | | Minus |
