UFO05434.5prime Sequence
1044 bp (926 high quality bases) assembled on 2009-07-06
> UFO05434.5prime
CAGTCGACATGCCCAGGCATTTAGTTGCCAGCTGCCTTCTGCTGGCTTTG
GGTCTGAACATGAGCCTGGCGGCGATTCACAAGCGCAGTGGTGCGAATTC
GTTGGGAGTGGATCCCGAGGGCAAGCCTGCGGCGAATCCTGCGGTCAGTG
TGGAGAACACTGACCTGCTGGACAAGCTGAGCTGGAAGTGCGCAAACAAC
GCGAGTTGCCTGTACGGGGTGGCCAATGGTCTCATGGCCTCCTACCGTCG
TGGTGAAACCCTCAAGCTGGGGCTTTTCGACCTGGTCAAGTTGCCCGAAC
TAGATGCTTCTCGGAAGCACAAGTGGGGCACTGGGCGCGGTCTCTCCGGC
TTTATGGACTTTGTGACGGAAAACGCCATCAGGGTGCCCGTGGGCCCCAT
GGTCTTCAGTGTTCAGCGAGCCGAGGACGACAGCGATTATATCGAGGTAG
CACTGCTGAAAAAGACCTCCAGCAGCACAGGCCGCCTGCAGGTCAATGGA
GGAGGACTACTGGGCGGTGGAGGTGGCCTGGGAGGAAATGGTGGCGGTGG
AGGAGGCCTGCTGGGCGGCGGAGGTGGTGACAATGGCGGCGGAGGCGGTC
TTCTGGGCGGACGGAGGCGGCACCAGCACCAGGACAAGAAGCAGTTCCAG
ATGTTCATACCCATGTACCTGGCGGCCACAACATTCGGGTGGACGATGGT
GGCCGCAAAGGCGGTGGGGCTCCTGACTCTCAAGGCTCTGATCCTGTCCA
AAATTGCCTTCGTGGTAGCCGCAATAGTGTTGATCAAGAAGCTCATGGAC
AACGCCAGCGAAAGATGATGTACCAGTTCCCGGACAGACGCCGTACATGA
TGCCGTACGGCATGACTATCGCTTCATGAGCGAAATATCGCAGAAATGTA
CCCGTCATCGCTGCACCACCTGCGATGCGGAGGCGCAGCTGCAGACATCC
GACATCAGGACTGGAAGTCTGACGCCGAAGCACCTGCACTCCGCCCAGTG
TCAGCGACGCAGCATACCACAGGCTCGCGCTGGGTGTCTGGTGA
UFO05434.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi4-RB | 1522 | CG10303-RB | 120..1149 | 9..1014 | 4550 | 97.5 | Plus |
| Osi4-RA | 1516 | CG10303-RA | 120..1149 | 9..1014 | 4550 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6221190..6221662 | 481..9 | 2365 | 100 | Minus |
| 3R | 32079331 | 3R | 6220221..6220557 | 813..477 | 1685 | 100 | Minus |
| 3R | 32079331 | 3R | 6219815..6219929 | 922..814 | 260 | 93.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:19:03 has no hits.
UFO05434.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:45 Download gff for
UFO05434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi4-RA | 120..1040 | 9..922 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:20 Download gff for
UFO05434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi4-RA | 120..1040 | 9..922 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:49 Download gff for
UFO05434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi4-RA | 120..1040 | 9..922 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:49 Download gff for
UFO05434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6220220..6220553 | 481..813 | 99 | <- | Minus |
| 3R | 6221191..6221662 | 9..480 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:20 Download gff for
UFO05434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2045942..2046275 | 481..813 | 99 | <- | Minus |
| arm_3R | 2046913..2047384 | 9..480 | 100 | | Minus |
