UFO05435.5prime Sequence
1062 bp (952 high quality bases) assembled on 2009-07-06
> UFO05435.5prime
CAGTCGACATGCGCACAGCTGTTTTGCTGCCACTTTTGGCCCTGCTGGCG
GTGGCTCAGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAATGGCATAC
GTTCAAGCTGGAGCACCGCAAGAACTATCAGGATGAAACCGAGGAGCGTT
TCCGCCTCAAGATCTTCAATGAGAACAAGCACAAGATTGCCAAGCACAAC
CAGCGATTCGCCGAGGGCAAGGTGAGCTTCAAACTGGCGGTCAATAAGTA
CGCCGATTTGCTGCACCACGAATTCCGTCAGCTGATGAACGGCTTCAACT
ACACTCTGCACAAGCAACTGCGTGCCGCCGATGAAAGCTTCAAGGGAGTC
ACCTTCATCTCGCCGGCTCATGTGACGCTGCCCAAATCTGTGGACTGGCG
CACCAAGGGAGCTGTGACCGCCGTCAAGGATCAGGGACACTGCGGCAGCT
GCTGGGCCTTCTCCAGCACAGGCGCCCTCGAGGGTCAGCATTTCCGCAAG
TCCGGTGTCCTCGTCTCGCTGTCCGAGCAGAATCTGGTCGATTGCTCCAC
CAAGTACGGCAACAATGGATGCAACGGCGGTCTCATGGACAATGCCTTCC
GCTATATTAAGGATAATGGAGGCATCGATACCGAGAAGTCCTATCCCTAC
GAGGCCATCGATGACTCGTGCCACTTTAACAAGGGCACAGTCGGAGCCAC
CGATCGTGGATTCACCGATATTCCCCAGGGTGATGAGAAGAGATGGCCGA
GGCTGTGGCCACCGTTGGTCCCGTTTCCGTCGCCATCGATGCCTCCCACG
AGTCGTTCCAGTTCTACTCGGAGGGCGTCTACACGAGCCGCAGTGTGATG
CCCAGAATCTGGATCACGGTGTGCTGGTCGTTGGCTTCGGCACCGACGAG
TCCGCCGAGGATTACTGGGCTGGGTGGAAAACTCGTGGGGCACCACCTGG
GGGCGACAAGGGCTTCATCAAGATGCCGGCGCCAACAAGGAGAAACAGTG
CGGCATCGCTAGGGCTCAGCTATCCTGGTCGCAAGCTTTCTGAACATCGT
GGGCGCGGCCAG
UFO05435.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp1-RC | 1369 | CG6692-RC | 104..1119 | 9..1025 | 4790 | 98.5 | Plus |
| Cp1-RA | 1486 | CG6692-RA | 221..1236 | 9..1025 | 4790 | 98.5 | Plus |
| Cp1-RD | 1481 | CG6692-RD | 313..1231 | 106..1025 | 4305 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13967029..13967716 | 322..1012 | 3050 | 97.7 | Plus |
| 2R | 25286936 | 2R | 13966753..13966969 | 106..322 | 1085 | 100 | Plus |
| 2R | 25286936 | 2R | 13962238..13962336 | 9..107 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:55:16 has no hits.
UFO05435.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:28 Download gff for
UFO05435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RC | 95..1126 | 1..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:44 Download gff for
UFO05435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RA | 212..1243 | 1..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:51 Download gff for
UFO05435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RA | 212..1243 | 1..1030 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:51 Download gff for
UFO05435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13966755..13966969 | 108..322 | 100 | -> | Plus |
| 2R | 13962229..13962336 | 1..107 | 96 | -> | Plus |
| 2R | 13967030..13967738 | 323..1030 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:44 Download gff for
UFO05435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9849734..9849841 | 1..107 | 96 | -> | Plus |
| arm_2R | 9854260..9854474 | 108..322 | 100 | -> | Plus |
| arm_2R | 9854535..9855243 | 323..1030 | 97 | | Plus |
