UFO05436.5prime Sequence
1075 bp (969 high quality bases) assembled on 2009-07-06
> UFO05436.5prime
CAGTCGACATGGCCACCGAAGAGGACATCCCCAGAATCCAATTGGGCGAC
TACATCGTCATCCAGCGGCAGAAATATACGAAGCTACAAAAATTCGGCAG
TCTGGACACCACGGCCACATTGGGCAAAGAAACACTGGAGCTGAAGTCTC
TTTTGGACCAACCCTATGGCTCCACGTTCAAGATGTGCGTCAAAGAGACA
AAGCCGGGTAAAAGGGGCGCCCAGAGACAACACACCTTGGAGCTGTGCAG
CGAGACTGAGCTGAGAAGCACGCGAGAGGTTCTGGGCATCTCCAGCAGTG
GAGCGGATAATCGGGACATCCGGGATGATGGAGAAGCGCAGACCCTGAAA
CCAGAGGACATTGCGCAGCTGCGTGAGGAGTGCAACGACTCCAGCAAAAT
CATCGAGAAGCTGGTGGAGAATTCTAAGACTTTCCACAACCGAACGGAGT
ACTCCCAAGAGAAGTACCTGCTAAAGAAGGAGAAAAAGTATTTCGAGTTC
GTTCAAATCCGCCAGCCAACGATCCGTCTGATGCTGGACATCTTCTACCG
CCAAGACTCGGAAAAGGTCATGGGCATTCGCGTTGACACTTTATCGCAAA
TTATTTCTTACTCGGGCGTTTGTGGATTCGGCAGCTATCTGCTGTACGAG
AGTGGTACCAATGGTCTACTGCCGGCTGCCATGCTCAACTCTATAGGCGC
AGGCACGGAGGGCACCCTGGTGCACATGCACCCGGGCAATGTGCCCCAGA
AGCAGGCGCTCTCAGCTCTGAAACTACCCCTGGAGCAGCAACAGCGATGT
GTTTCCGTTAATCTCTATTCCGTTTTAACGGAGTTTTACCAAAGGAGGGG
ACGCGAAGGCCACAGATATTCCCGTTGTGGAGCCCAGTGAAACGAACCTC
AGAACCCAGCTGGAGACGCACGGAGACACCTGAGCGATAGACCGACACAA
GAACCAAGCTGGATGAGTCAATAGTGTAGAGAGAGCAAAGGGACTCGCGC
TGGCATTGAACAGCGGCCACGTCCTGATGCACGTCGAATCGACGTCTGGT
GTGCGCAGGACACATCCAATTCTGC
UFO05436.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-RD | 1613 | CG9596-RD | 236..1307 | 8..1051 | 4640 | 96.9 | Plus |
| CG9596-RC | 2175 | CG9596-RC | 93..1164 | 8..1051 | 4640 | 96.9 | Plus |
| CG9596-RB | 1470 | CG9596-RB | 93..1164 | 8..1051 | 4640 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6560655..6561568 | 919..8 | 4395 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:47 has no hits.
UFO05436.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:29 Download gff for
UFO05436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 89..1111 | 1..1007 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:05 Download gff for
UFO05436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 89..1111 | 1..1007 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:34 Download gff for
UFO05436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 89..1111 | 1..1007 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:34 Download gff for
UFO05436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6560490..6560513 | 986..1007 | 91 | <- | Minus |
| 2L | 6560577..6561572 | 1..985 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:05 Download gff for
UFO05436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6560490..6560513 | 986..1007 | 91 | <- | Minus |
| arm_2L | 6560577..6561572 | 1..985 | 97 | | Minus |
