UFO05438.5prime Sequence
1089 bp (986 high quality bases) assembled on 2009-07-06
> UFO05438.5prime
CAGTCGACATGCACAGCCAACAACTGACTTTGATTTTCGGCATGACCCTC
CTGTGGTCAATGGCCAGCGGCACCACCCAACCGCCGAGCCGACGTCCGCC
GGTTACCACCGCCCGCACCACGCCCCGCAATTGCCCGCTCTTCCCGCAGG
TCTGCTCCCAGACAAGTCCCAGAGTTTGCGGACGAACTGCGCGTGGCGAG
TGCCAACGTTTCGAGAACATCTGCCACCTGATGCTGGCCAATGTGCTACG
GCAGCCGGAGGGCGTGCGGCACACCCGCGACATCGATTGCCGCAACGTGA
GGGGAACGGGTGCCGCCAATCGGCGACCCTGCTATAATCCCTGCCCCGCA
CGTCCCGTCGTCTGCAAGAGATCACCGCCCAGCCAGCAAATCTGCGTGCG
TAGCAGGGACAACCGGCAGTGCAAGGTGTTGGCCAATAGTTGCCAGCTGC
GCAACCAGAATTGCCACAGTCAGCCCAGGAACAACTGGCTGCGCACCGAC
AGGCGGCGTTGTGGACAGCTGCAGCTGGGCGATAAGCCGCAGAATTGCAT
CCGGGTGCCAGTGCGGCCCAGACCCACACGTGCGCAGCACCACTCGACGC
AGCACTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG
ACATGGAGCATCACAAACGGCATGATGACCTGATCGCAGCGCATCAGCAC
TGTCGCTTGCGTATATATTTGCCATGTGAAACGGGGGCGAAGAGTTGTCA
TATGCCACGTTTATCAACTGTGAACTCACCCATGATGCTGAAACGAAAAA
TATTCTCATACCGTAGAATAGCAGTTCCGTACCGCCACT
UFO05438.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32762-RB | 854 | CG32762-RB | 67..666 | 9..608 | 3000 | 100 | Plus |
| CG32762-RA | 822 | CG32762-RA | 35..634 | 9..608 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5500618..5501062 | 483..39 | 2225 | 100 | Minus |
| X | 23542271 | X | 5500396..5500520 | 608..484 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:18:03 has no hits.
UFO05438.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:45 Download gff for
UFO05438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32762-RA | 16..628 | 1..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:31 Download gff for
UFO05438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32762-RA | 16..628 | 1..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:16 Download gff for
UFO05438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32762-RA | 27..639 | 1..614 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:16 Download gff for
UFO05438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5500391..5500520 | 484..614 | 97 | <- | Minus |
| X | 5500618..5501061 | 40..483 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:31 Download gff for
UFO05438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5394424..5394553 | 484..614 | 97 | <- | Minus |
| arm_X | 5394651..5395094 | 40..483 | 100 | <- | Minus |
