UFO05439.5prime Sequence
1145 bp (1006 high quality bases) assembled on 2009-07-06
> UFO05439.5prime
CAGTCGACATGCCTCCTCCACCACCGCACCACCACCACAACCCGCCGCCT
CATGGGCCACCGCCCCACGGACCACCGCACCATGGACCTCCGCACCATGA
ACCACAGCCCCCGTTCCACACGCCAGTGCATCCGATTTACCACGAACCTC
CTCACGGAAACAGCTCCGGCTACAATCCTCCGCCGCCGCATGGTCCGTAT
CCATATGGTCCAGGATACGTGGCCCCAGGACCTCCAATGCATCCGCGAGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTT
GTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGAT
TGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCC
AGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTG
CCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTG
CTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCT
CCCCGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGGGGG
CAAGATGTGAATAAGGCCGGATAAAACTTGTGCTTATTTTCCTTACGGTC
TTTAAAAGCCGTAATATCCAGCTGAACGGTCTTGTTATAGGTACATTGAG
CACTGACTGAATGCCTCAATGTTCCTTACGATGCATGGATATATCACGGG
GTATATCAGGATTTTTCCATTTAGCTCTAGTCTGAAAGATCTACT
UFO05439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5011-RB | 550 | CG5011-RB | 190..429 | 9..248 | 1200 | 100 | Plus |
| CG5011-RA | 443 | CG5011-RA | 83..322 | 9..248 | 1200 | 100 | Plus |
| CG43349-RB | 459 | CG43349-RB | 141..193 | 45..97 | 190 | 90.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1200860..1201099 | 9..248 | 1200 | 100 | Plus |
| 2L | 23513712 | 2L | 1200345..1200397 | 45..97 | 190 | 90.6 | Plus |
Blast to na_te.dros performed 2014-11-28 23:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..299 | 814..883 | 124 | 67.6 | Plus |
UFO05439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:46 Download gff for
UFO05439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5011-RA | 617..867 | 2..253 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:18 Download gff for
UFO05439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5011-RA | 76..326 | 2..253 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:59 Download gff for
UFO05439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5011-RA | 76..326 | 2..253 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:59 Download gff for
UFO05439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1200853..1201099 | 2..248 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:18 Download gff for
UFO05439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1200853..1201099 | 2..248 | 98 | == | Plus |
