UFO05443.5prime Sequence
1110 bp (996 high quality bases) assembled on 2009-07-06
> UFO05443.5prime
CAGTCGACATGCACGCGACTGTCATCTCGGCTTTCGGGATAGTATATCTA
CTGTTCCTGTTCCTGGGACATCTTTCTGCTCAAATTACCGTGAGTCCAAG
CACGTTCAATCCTCTTATGGTCGACAGCAAGCCGGAACCCGCCACAAAAA
ACTCTTGGCACATTAATAATTATTATCCAAAAAGGTGGTTAATAAATATG
AATAGTTCCGATAAGAAACTCAGACAATCCTACGATTACCGCCCGCTGCA
CAATCCCCTCTATGGGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAA
AACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGG
TGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAAC
CCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGA
ATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCG
ATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACA
CTATCCCATATCACCAGCTCACGTCTTTCATTGCCATACGAAATTCGGAT
GAGCATTCATCAGGCGGGCAAGAATTGTGAATAAAGCGATAAACTTGGTG
CTTATTTTTCTTTACGGTCTTTAAAAGCGTAATATCAGCTGACGGTCTGG
TTATAGTAATGGCACTGACTGAATGCCTCAAATGTCTTTACGATGCATGG
GAATTATCAC
UFO05443.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33494-RB | 849 | CG33494-RB | 55..312 | 9..266 | 1290 | 100 | Plus |
| CG33494-RA | 751 | CG33494-RA | 55..312 | 9..266 | 1290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25494215..25494411 | 205..9 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 25494018..25494080 | 266..204 | 315 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 835..902 | 123 | 68.1 | Plus |
UFO05443.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2010-08-02 18:18:47 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 22:23:46 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 19:41:00 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:00 Download gff for
UFO05443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25494018..25494078 | 206..266 | 100 | <- | Minus |
| 3R | 25494215..25494415 | 1..205 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:46 Download gff for
UFO05443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21319740..21319800 | 206..266 | 100 | <- | Minus |
| arm_3R | 21319937..21320137 | 1..205 | 98 | | Minus |
