UFO05446.5prime Sequence
1100 bp (910 high quality bases) assembled on 2009-07-06
> UFO05446.5prime
CAGTCGACATGCTGCACATGGAAATCATCCAATTCAGACAACGTCACACG
ATGTGGAACTTTTTGGATCGCTTCGAACTGGACGCAGAGGATCGACAGTG
CCTCGAGAGATTACAGCAGCCGGCGGAAAGATCCACCGATAAGAGCTTCA
CACCAAAGGTCAGTTTGCGTTATCAGCCCGCGATCGTCCCATCATTCCTG
TCTATTGGGATTGCGGTGACTATCTGCCTGGGATCTGCCCTCGCCGCTCC
GCAATCCTCCTGCATCATGTGCGACAAGGAGGACCTGCGACCACGACTTC
CTCCCTACAGCGACAGCTACGAGGAGTACACCTTCGACCACCAGGTGACC
CAGCAAGCGGCCCTGGAGTCCATTCAGAAATTTAACGGCTCAAGAGGTCA
GAACAATGCCTGCAGTTCAATCAAGTGCCCACCGAATACACCAAAGTATT
GCCTAGGCGGTCAGTTTATCAACGACCATTGCTGGTGCGAACTGCAACAC
AGAGAAGAGGGCCTGCCCTATGTGCCTCACGTGTGCTTCGCGGATCAGAA
GGTGCACACATCATCCGTGGAATCCTGCTTCACATTCGTCCAGGTCAAGG
AGTGCTGCTGTGCTGAGATCTGGATCAAGAAGTGGCGTCACATTTCCGGC
AGTTCTCGTGGCCAGCACGTGCCAAATGTGTTAGTGCTACTAATATTGAA
CCTGCTTTCTGCATTCAGTATACTCACCTGCCGAAGAAGGAGACGAATAT
TTTGGCAAAGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATATCATAATCACAACTAGCCT
AGAGATCCTGGGTCATGACTAGTGCTTGCATTCCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTTGAACAATCCAGATGGAGTCTGAGGTCA
TTACTGATCTATTCGACAGGGATTCAAGCGAGCCTCGATATTCAATTACC
GCCCCGCCCTGCCCTCATCGCAGTTACTTTTGCAATCATAAGCATTCTGC
CGACTGAGCATCACAAACGGATGGATGAACTGATCGCAGCGCATCCGACC
UFO05446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5910-RB | 1148 | CG5910-RB | 209..961 | 9..761 | 3765 | 100 | Plus |
| CG5910-RA | 1063 | CG5910-RA | 124..876 | 9..761 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20446020..20446401 | 9..390 | 1910 | 100 | Plus |
| 3L | 28110227 | 3L | 20449508..20449636 | 506..634 | 645 | 100 | Plus |
| 3L | 28110227 | 3L | 20450266..20450393 | 634..761 | 640 | 100 | Plus |
| 3L | 28110227 | 3L | 20446746..20446819 | 391..464 | 370 | 100 | Plus |
| 3L | 28110227 | 3L | 20446877..20446922 | 462..507 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:56 has no hits.
UFO05446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:41 Download gff for
UFO05446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5910-RB | 203..973 | 3..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:25 Download gff for
UFO05446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5910-RA | 118..888 | 3..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:12 Download gff for
UFO05446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5910-RA | 118..888 | 3..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:12 Download gff for
UFO05446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20446014..20446401 | 3..390 | 99 | -> | Plus |
| 3L | 20446746..20446819 | 391..464 | 100 | -> | Plus |
| 3L | 20446880..20446922 | 465..507 | 100 | -> | Plus |
| 3L | 20449510..20449635 | 508..633 | 100 | -> | Plus |
| 3L | 20450266..20450410 | 634..775 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:25 Download gff for
UFO05446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20439114..20439501 | 3..390 | 99 | -> | Plus |
| arm_3L | 20439846..20439919 | 391..464 | 100 | -> | Plus |
| arm_3L | 20439980..20440022 | 465..507 | 100 | -> | Plus |
| arm_3L | 20442610..20442735 | 508..633 | 100 | -> | Plus |
| arm_3L | 20443366..20443510 | 634..775 | 94 | -> | Plus |
