UFO05447.5prime Sequence
1079 bp (977 high quality bases) assembled on 2009-07-06
> UFO05447.5prime
CAGTCGACATGACCGAGAAGAGGGAGCGGCCGGGCCCGCTGCGCTGGCTG
AGACACCTGCTCGACCAGCTCCTGGTGCGAATCCTTAGCCTGAGCCTCTT
CCGTTCGCGCTGCGATCCGCCGCCTTTGCAGCGTTTTCCCGCAACGGAAC
TACCGCCTGCCGTCGCCGCCAAATACGTGCCCATTCCAAGGGTGAAGGGA
CTTCCGGTAGTTGGGACACTTGTGGATCTTATAGCCGCCGGCGGAGCCAC
GCACCTTCATAAGTACATCGATGCGAGGCACAAGCAGTATGGTCCCATTT
TCCGGGAGCGATTGGGCGGTACCCAGGATGCAGTGTTCGTATCGTCCGCA
AATCTCATGCGCGGAGTCTTCCAGCACGAGGGTCAGTATCCGCAGCATCC
GCTGCCGGATGCCTGGACGCTGTATAACCAGCAACATGCCTGCCAACGGG
GACTGTTCTTCATGGAGGGCGCCGAGTGGCTGCACAACCGACGCATACTT
AATCGACTGCTGCTCAACGGAAATTTGAATTGGATGGACGTGCATATTGA
GAGCTGTACCAGACGAATGGTGGATCAGTGGAAAAGACGCACTGCGGAGG
CGGCGGCGATTCCGCTAGCGGAGAGTGGTGAAATACGAAGCTACGAACTG
CCCCTGTTGGAACAACAGCTCTACCGTTGGTCCATAGAAGTTCTGTGCTG
CATCATGTTTGGCACCAGCGTGCTCACCTGCCCCAAGATCCAGTCCTCGC
TAGACTACTTCACGCAGATTGTGCACAAGGTGTTTGAGCATAGCTCGCGA
CTGATGACATTCCCGCCTCGCTTGGCCCAGATTTTGCGCCTGCCCATCTG
GCGGGATTTCGAGGCCAATGTGGATGAGTGCTGCGTGAGGGAGCTGCCAT
AATCGATCACTGCATCAGAGTGCAGAGACCAAAGGAGACCGCACGATGAG
GCGCTTACCATCGCCTCCAGGCGGCGGATTGTGCCAGGCGAAATTGAACA
AGCGATATTTTGTAAGACTTGTTCATTGCAGCCAGGTGAACCGACCGCAA
TTCAGCAGTCAGTGTCTTTGTTGCCTTTC
UFO05447.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sad-RA | 1773 | CG14728-RA | 107..1170 | 9..1072 | 4945 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11878655..11878960 | 689..991 | 1290 | 97.7 | Plus |
| 3R | 32079331 | 3R | 11877341..11877585 | 9..253 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 11878359..11878585 | 464..690 | 1135 | 100 | Plus |
| 3R | 32079331 | 3R | 11878062..11878272 | 254..464 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:25:00 has no hits.
UFO05447.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:42 Download gff for
UFO05447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sad-RA | 102..1179 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:51 Download gff for
UFO05447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sad-RA | 102..1179 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:30 Download gff for
UFO05447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sad-RA | 102..1179 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:30 Download gff for
UFO05447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11877336..11877585 | 1..253 | 98 | -> | Plus |
| 3R | 11878062..11878271 | 254..463 | 100 | -> | Plus |
| 3R | 11878359..11878585 | 464..690 | 100 | -> | Plus |
| 3R | 11878657..11879009 | 691..1043 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:51 Download gff for
UFO05447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7703058..7703307 | 1..253 | 98 | -> | Plus |
| arm_3R | 7703784..7703993 | 254..463 | 100 | -> | Plus |
| arm_3R | 7704081..7704307 | 464..690 | 100 | -> | Plus |
| arm_3R | 7704379..7704731 | 691..1043 | 95 | -> | Plus |
