UFO05448.5prime Sequence
1083 bp (936 high quality bases) assembled on 2009-07-06
> UFO05448.5prime
CAGTCGACATGGCAATGAGAGCGCTCATCTTTCTGGCCCTCGCCACTCTG
GTGGCTGGCGAAGGTCTTCGGCTTCCGGACCAGCAGTCGTCCAACAACAT
CCAGCAAGTCTACGCACCGCAGCCACCGGCTCAGCAGATCCAGCAACCCC
AGCAGCAACAACAGTTTCCACAGGCACAGCAGCCAGGAGTTGGCGAGGAA
CGCGGACGCTCCTCCCTGCTCAGCATCTTTGGCCTGGGCAACGACAACGA
TCCCTTCCTGGCCAGGACCAACAGCAACTGCCTCGGCGGCGACCTCTCCG
AGTGCTTCAAGACTCAGGCGCTCAACACCTTCGACGAGATCTTCTTCAAG
GACCAGTACAAGCTCTCCGACTTTGCTCGTGTGGTGCGACTGCCAGAAAC
CCAGCAGAGGTCCTTGCTGCAGGAGCCATTCGAGTACTCCGAGGAGCCAC
GTGGCGACGACGACGAGTGGAATCAGCTGCTGAAATATGGACTCCGAAGG
GCCGAACGCTTCATCAAGTCCACGGCTCTAGAGGTCGAGTGGCCCGAGGA
ACTCACCGAAGCCGGTCGTTATGAAGCACGCTTCATCGGAAACGACATTG
ATGGCGAACTGGACCTCATTGATGATGGACAGCGGGCTGGACATTTCTCG
CGTAAGAAGTTGAAGAAGATGATCATTCCCCTGCTGCTGGTGCTGAAGAT
CTTCAAGCTGAAGTTGCTGCTCTTCCTGCCCTTCATCCTTGGAATCGCTG
GCCTCAAGAAGATCCTTGGATTGGCCGCTATTGTCCTGCCCGGTCTGTTC
GCCTACTTCAAGCTGTGCCGTCCGCCAGGTGGGGGTTGGAGGAGCATTCG
CGGTGGACTGTCGGGCCTGTTTGGCGGCAAGAACACCTTCCCCGAGTACA
ACCCCCAAGGAGTGGGAGCTGCCACCCTACTACCACCCACCCACGAGCAC
TTGGAGGGGCGGGCCATGGAGGGCGCTCCAGGGACCTTACTACCGCCAGG
GAGCCAGCTTTGTCCAAGCCCTACACCGACTACTACAGCAGAGCTACCAG
TAGCAGGTCCAGGGCCAGCAGTGGCGCATCGTC
UFO05448.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi2-RC | 1391 | CG1148-RC | 106..1165 | 8..1071 | 4910 | 98.1 | Plus |
| Osi2-RA | 1474 | CG1148-RA | 189..1248 | 8..1071 | 4910 | 98.1 | Plus |
| Osi2-RB | 1449 | CG1148-RB | 164..1223 | 8..1071 | 4910 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6211461..6211815 | 8..362 | 1775 | 100 | Plus |
| 3R | 32079331 | 3R | 6212849..6213267 | 649..1071 | 1430 | 94.4 | Plus |
| 3R | 32079331 | 3R | 6212093..6212239 | 362..508 | 735 | 100 | Plus |
| 3R | 32079331 | 3R | 6212388..6212528 | 508..648 | 705 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2517 | 77..281 | 168 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..3025 | 91..340 | 161 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6886 | 92..185 | 160 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6865 | 92..182 | 144 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6833 | 79..183 | 139 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6815 | 92..183 | 135 | 64.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1150 | 116..185 | 134 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2393 | 102..185 | 132 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6585 | 143..196 | 125 | 74.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1160 | 79..183 | 120 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6934 | 69..203 | 119 | 57.7 | Plus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2234..2272 | 149..189 | 119 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2469 | 132..293 | 118 | 54.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3259..3330 | 113..183 | 114 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2917..2971 | 736..682 | 113 | 67.3 | Minus |
UFO05448.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:43 Download gff for
UFO05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi2-RA | 181..1262 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:48 Download gff for
UFO05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi2-RB | 158..1237 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:55 Download gff for
UFO05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi2-RB | 158..1237 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:55 Download gff for
UFO05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6212093..6212239 | 362..508 | 100 | -> | Plus |
| 3R | 6212389..6212528 | 509..648 | 100 | -> | Plus |
| 3R | 6211457..6211814 | 1..361 | 99 | -> | Plus |
| 3R | 6212849..6213281 | 649..1083 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:48 Download gff for
UFO05448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2037179..2037536 | 1..361 | 99 | -> | Plus |
| arm_3R | 2037815..2037961 | 362..508 | 100 | -> | Plus |
| arm_3R | 2038111..2038250 | 509..648 | 100 | -> | Plus |
| arm_3R | 2038571..2039003 | 649..1083 | 94 | | Plus |
