UFO05449.5prime Sequence
1116 bp (983 high quality bases) assembled on 2009-07-06
> UFO05449.5prime
CAGTCGACATGGATTCAATGTACGGAATTATTGCAATAGTGTCGCTCATC
CTGGTCGCTGGTCAAGTCCAGGCACAGGGCCAGAACGCGGAACTTAATCA
AAGTTGCGGTGCATCAAATGAGCACCAATGCGTCCCGCGTCATATGTGCA
AGGTCAAAATTGAGTTTCGAATGGCAATGACATACCGCAACCTAGGATGT
GTTTCAACTGCGATTTGCTGCCCCAAGAACCTAATAATCAAGGAGCCTAG
ACTTATCATTAATGAACCGATAACTGATCCCCAGTGCGGATTTGTCAACT
CGAAAGGTGTGACCTTCTCATTTAGAGAGGAGGATACGGGCTTGGCCCAG
GAGGCGGAGGTACCATGGATGGTGGCCTTGCTGGATGCCAGAACCAGCAG
CTATGTGGCCGGTGGCGCCCTCATCGCTCCACATGTAGTGATCACGGCCA
GGCAAAGAACCGAAAACATGACCGCAAGCCAGCTTGTTGTGCGAGCTGGC
GAATGGGACTTCAGCACCAAAACCGAGCAGCTTCCTTCTGTGGACGTTCC
TATTCGGTCAATTGTCCGTCATCCTGGCTTCAATTTAGAGAATGGGGCCA
ATAATGTGGCCCTTGTGTTTCTTCGCAGATCGCTCACCAGCTCGCGCCAC
ATAAATCCAATATGTATGCCGTCGGCTCCAAAGAATTTTGACTTTAGCCG
GTGCATATTTACGGGCTGGGGAAAGAATTCCTTTGACGATCCCTCCTATA
TGAATGTCCTGAAAAAAATATCATTGCCGGTGGTCCAAAGGCGTACCTGT
GAGCAGCAACTTCGCCTCTATTACGGAAACGATTTTGAACTGGACACAGC
TTAATGTGCGCAGGCGGTGAGCCTGGAAAGATTCGTGCGGAGGGGTGACG
GTGGATCCCGCTAGCCTGCGCGATAAAAGACATCCGCAGCGCTACGACTG
GCTGGCATTGTGACCTCCGGCGTTGACTGGCGGGTTGCCTGGCGTTCCCG
CTGTTTTATACAAATGTGGCTAACGTAATTGAATGGGATTACTTTGGACA
CTGTCAACATGCCGCCTGCCTGAGAAGCGCGAAGGAGGTCCTTACGCAGT
CCACACTTCCTGCAGG
UFO05449.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18477-RA | 1483 | CG18477-RA | 6..1114 | 9..1116 | 5070 | 97.9 | Plus |
| CG31780-RB | 1483 | CG31780-RB | 6..1114 | 9..1116 | 5070 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15661504..15662364 | 237..1098 | 3625 | 97.2 | Plus |
| 2L | 23513712 | 2L | 15696501..15697361 | 237..1098 | 3625 | 97.2 | Plus |
| 2L | 23513712 | 2L | 15661046..15661273 | 9..236 | 1140 | 100 | Plus |
| 2L | 23513712 | 2L | 15696043..15696270 | 9..236 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:25:04 has no hits.
UFO05449.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:18:58 Download gff for
UFO05449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31780-RB | 1..1109 | 9..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:53 Download gff for
UFO05449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31780-RB | 1..1114 | 5..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:32 Download gff for
UFO05449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31780-RB | 1..1114 | 5..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:32 Download gff for
UFO05449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15661039..15661273 | 1..236 | 98 | -> | Plus |
| 2L | 15661504..15662342 | 237..1074 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:53 Download gff for
UFO05449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15661039..15661273 | 1..236 | 98 | -> | Plus |
| arm_2L | 15661504..15662342 | 237..1074 | 97 | -> | Plus |
