UFO05453.5prime Sequence
1067 bp (953 high quality bases) assembled on 2009-07-06
> UFO05453.5prime
CAGTCGACATGTTCAAATTGTTCGTTCTCGCTGCTCTTTTGGCCGTGGCC
GCCGCCAAGCCCGGTCACCTGGCTGCTGCTCCTCTGGTCTACAGCGCTCC
CGCCACCACCACCGTCGTCCAGGAGCCCGTTCTGGCCAAAGTGGGTGCTG
TTGTGAAGAGCGTGCCCACCGCCGTGTCCCACCAGAGCCTGACCCAGGTG
CACAGCACCCCCGTGGTGGAGGATGTGGTGGCTCCCGTGGTCAAGACCAC
CGCTGTCCACTCCGCTCCCGTGTTGGCCGCCGCACCCATTGTGAAGACTT
TGGCTCCCGTCGCCTACTCTGCTCCTCTGGCCTACTCCGCCCCGGTGGCC
TACTCCTCGTATGCCGCTCCTCTGACCTATTCCGCACCGGTGGCCTACTC
GGCTCCCCTCTCCTACGCCGCCCCAGCTCCCCTGCTGCACCACGCCCCTC
TGACCTACGCCGCTGGCTCCTGGGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCTTGCGTATATATTTGCCCATG
GTGAAACGGGGGCGAGAGTTGTCATATTGGCCACGTTAATCAAACTGGTG
AACTCACCCAGGATGCTGAGACGAAAAACATATTCTCAATAATCCTTTAG
GAATAGCAGCTTTCACGTAACACGCCCATCTTGCAATATATGTGTAGAAC
TGCGGAAATCGTCCTGATTATCGAGCGATGAACGTTCAGTTGCATGGAAA
CGGTACAGTGAACATCA
UFO05453.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13044-RA | 624 | CG13044-RA | 66..530 | 9..473 | 2325 | 100 | Plus |
| CG13043-RA | 646 | CG13043-RA | 185..327 | 111..250 | 290 | 81.1 | Plus |
| CG13063-RA | 544 | CG13063-RA | 46..292 | 7..250 | 240 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16302584..16303037 | 473..20 | 2270 | 100 | Minus |
| 3L | 28110227 | 3L | 16305544..16305686 | 250..111 | 245 | 79.7 | Minus |
| 3L | 28110227 | 3L | 16306779..16306906 | 79..206 | 205 | 77.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:36:14 has no hits.
UFO05453.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:59 Download gff for
UFO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13044-RA | 41..515 | 1..477 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:23 Download gff for
UFO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13044-RA | 59..533 | 1..477 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:44 Download gff for
UFO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13044-RA | 59..533 | 1..477 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:44 Download gff for
UFO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16302584..16303041 | 13..473 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:23 Download gff for
UFO05453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16295684..16296141 | 13..473 | 99 | | Minus |
