UFO05456.5prime Sequence
1115 bp (995 high quality bases) assembled on 2009-07-06
> UFO05456.5prime
CAGTCGACATGGCCGAAAAGGTGGAACTACTGGCCCAGGCCAGCATGAAT
GGCCAACAGAATGATACGCGGAAGGTGCGCAAATCACCGGAATTTCAGCC
CGGCGTTATCTCCCGCGAACGCAGCTTTGTGCGCACCTCAAATCAACAGA
ATATCAACAAACGGCGAAGTCTGGCTTTCAACGTACCTGGCAATCAGACG
GGACAGATGAGGGGCAAACCAGCCATGGATATCTACAGGCCTCCCAATGT
GCGCGGAGAGCTAGCCGCTCCAGCCGGTGGTGTCGGTGGTGATGGTCCGA
ATGGTGCTATCGGTGGTGTCGCCAACAAGCTGAACGTCAATGCCCAGGAG
TTCACAATGACAACCAGCTCCGGGGCACCGGCCGAGGCACTCGGCAACCG
TTCGTCGCTAATACTTCCGCTCACCAATGGACCCGGAGTGGGAGTTGCAC
CGGGTTTGGGTCCGTACGGAAACGTGAATCGCCGCCAGGCCGGACACTCC
CTCGGCAACATGCCGGGCTTGAAGGCCAACCACCGGTCGATCCTGGTGAC
GTATCCAATCAATACCGGTGCCCTCAGCGGTCAGCTGCCGCTAATGAACT
CGCCATCCAGTGGAAATATACTTCACACAACAAATCGTGTAAAGTTTGCA
CCTGAGCCCCGAGGTCACAAAGTGGCTTCGCATAATCAGTTTGGTCAACT
AAACAACAACTATGCTCAGCCTTATCAGGCGAATATTAATGGAGTAGATC
CTTACATGAATGGAAATGCACTGCAACGCTCCAAGTCGTTGTCGTCGGCG
GATGCCCTTACTCGTGGAATGGCCGGATTGGGACTAGGTTTGGGCAACGA
GGTGGCCGACATAGGACAGTTCACGCCAGAGATCAAGCGCTTATTGACAC
GGCCCTGGAGGATCCCAATAAACTGAACTCTCGCTGTCTTCATGGAACTG
AACATCGCAGTTCATCAAACGCGCGGTGGAAGAGTCGCCCGTTTTGCTCT
GCCAATTATCACGACTGTTTTTGAACATCATTGCCCGGAGCAGAAGAACG
TTCTCGAGGCGCCTCCTCAACCATGCGTCATGGTACAGGAGCGTGAGAAC
CTGTTTGTTTGCATT
UFO05456.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13124-RH | 3084 | CG13124-RH | 1214..2319 | 9..1112 | 5115 | 98.2 | Plus |
| CG13124-RG | 3137 | CG13124-RG | 1267..2372 | 9..1112 | 5115 | 98.2 | Plus |
| CG13124-RF | 2977 | CG13124-RF | 1107..2212 | 9..1112 | 5115 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9904351..9904758 | 1038..627 | 1720 | 97.8 | Minus |
| 2L | 23513712 | 2L | 9904827..9905053 | 626..400 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 9905138..9905291 | 400..247 | 770 | 100 | Minus |
| 2L | 23513712 | 2L | 9906033..9906173 | 149..9 | 705 | 100 | Minus |
| 2L | 23513712 | 2L | 9905875..9905974 | 246..147 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:53:12 has no hits.
UFO05456.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:01 Download gff for
UFO05456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13124-RB | 1196..2308 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:23 Download gff for
UFO05456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13124-RF | 1103..2215 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:53 Download gff for
UFO05456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13124-RF | 1103..2215 | 1..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:53 Download gff for
UFO05456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9904283..9904758 | 627..1099 | 96 | <- | Minus |
| 2L | 9904827..9905052 | 401..626 | 100 | <- | Minus |
| 2L | 9905138..9905291 | 247..400 | 100 | <- | Minus |
| 2L | 9905875..9905971 | 150..246 | 100 | <- | Minus |
| 2L | 9906033..9906177 | 1..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:17:23 Download gff for
UFO05456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9904283..9904758 | 627..1099 | 96 | <- | Minus |
| arm_2L | 9904827..9905052 | 401..626 | 100 | <- | Minus |
| arm_2L | 9905138..9905291 | 247..400 | 100 | <- | Minus |
| arm_2L | 9905875..9905971 | 150..246 | 100 | <- | Minus |
| arm_2L | 9906033..9906177 | 1..149 | 97 | | Minus |
