UFO05463.5prime Sequence
1118 bp (990 high quality bases) assembled on 2009-07-06
> UFO05463.5prime
CAGTCGACATGAAATCAACACGCAAAGTAGTTGGGATTTTTTTGGCCACC
TGCCTGCTGCCTTTCACCGTTCTACAAAATGTTGCGGCACAAGGAAGTTG
TAGGAATCCCAACCAGAAACAGGGACAATGTTTGTCCATATACGACTGTC
AAAGTCTGCTTTCCGTGATTCAGCAGTCTTATGTCAGCCCGGAGGACAGA
ACCTTTCTTCGAAACTCACAGTGCCTCGATGGAGTAGGTCGCCAGCCATA
TGTTTGCTGTACAAGTGATCGCAGCTTTGGATCCCAGGAGGCCACCTCCG
CAGCCCCTCCTCCAACGACTACCAGTTCAAGTTCACGAGGTCAAGACGGT
CAAGCGGGTCTGGGCAACCTGCTGCCCTCGCCACCCAAGTGCGGGCCCCA
CTCCTTCAGCAATAAGGTCTATAATGGCAACGACACTGCTATTGACGAGT
TCAACTGGATGGCACTGCTTGAGTACGTGGATAGGGACGGCGGGAACTCA
GTTGCGGTGGCAGTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAAT
TACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCAT
TCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAAC
GGGGCGAAGAAGTTGTCCATATTGGCACGTTTAAATCAAAACTGGTGAAC
TCACCCAGGATTGGCTGAGACGAAAAACATATTCCTCATAAACCCTTTAG
GAAATAGGCAGGTTTTCACGGTACACGCCCCATCTGCAATATATGTGTAG
AACTGCGGATCGTCTGAATCACTCGACGATGAAACGTTCAGTTGCTCATG
AACGGTTACCAAGGGTAA
UFO05463.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sp7-RF | 1565 | CG3066-RF | 156..666 | 9..515 | 2485 | 99.2 | Plus |
| Sp7-RE | 1418 | CG3066-RE | 156..666 | 9..515 | 2485 | 99.2 | Plus |
| Sp7-RA | 1851 | CG3066-RA | 589..1099 | 9..515 | 2485 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7762007..7762394 | 97..484 | 1940 | 100 | Plus |
| 3R | 32079331 | 3R | 7761187..7761276 | 9..98 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:53:15 has no hits.
UFO05463.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:18 Download gff for
UFO05463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp7-RD | 561..1073 | 1..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:26 Download gff for
UFO05463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp7-RA | 583..1099 | 1..515 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:54 Download gff for
UFO05463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp7-RA | 583..1099 | 1..515 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:54 Download gff for
UFO05463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7762007..7762393 | 97..483 | 100 | -> | Plus |
| 3R | 7762461..7762492 | 484..515 | 100 | == | Plus |
| 3R | 7761181..7761274 | 1..96 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:17:26 Download gff for
UFO05463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3586903..3586996 | 1..96 | 95 | -> | Plus |
| arm_3R | 3587729..3588115 | 97..483 | 100 | -> | Plus |
| arm_3R | 3588183..3588214 | 484..515 | 100 | == | Plus |
