UFO05465.5prime Sequence
1089 bp (946 high quality bases) assembled on 2009-07-06
> UFO05465.5prime
CAGTCGACATGGAGACCAAAGAGAAGGATTTCAAGCGGGCCAAGACCGTG
CGCACCGAATATGTGGACGGTGTGGACGAGGTGCAGCGTTGGCTGCTCCA
GGCAGAGGTGCAGGTGCAGGAGAGAAGCCTCACACCCACACAGATGAAGG
AGCTGCTGCAGCGCATTAACCACGAGATCACCGCCATCTACGAACGCTTC
ACCCTGGTCAAGACCAACGGTCAGCTGATCATCGAGAACTGTCGCAACAG
CGAGGAGAAGACGCTGGTGCAGACGACCATCGATCAGTTGGCCGCATCGC
TGGCCCAGGTACGCGGTTGGCTGGATGAGAAGAAGCAGGCGGTGGGCGAT
AGTCTGGACGCGTGGACGAGGTTCATGAACCTCTACCAGATCGTGATGTC
GTGGGCATCCGAGAAGCGCAACTTCATTGACCAGACCATCGAGCTGCGCA
CCCTGCCCGAGGCACGCAACAAATTGAACGACTATGTGACGTCTGTGAAG
AGTATTAAACCGATTGTGAAGCATCTGAGCGAAATGGACAAGGAACTGGA
GCACATTGGCCAAGTGACGACTGTGGGCGATCTCAAGGACAAACTGCAGG
AGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGAAC
TCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAAGAT
TAAAGATATACGCTCCTGGCACGAAAAGACGAAGCAGGACTGGACTCCTC
GCAGCAGCAGAAGAAACCGCTGCGCGATCAGCTCGGTTTCTGTGAGAGAC
CCTGGCCGATATCAATGTGCAGAAACGAAACTGAGACTGTCCATCGAAAA
CTGGAGGTCATTTCCGCATGGCATGGGCGGTGATCCGCGCCTGAGCGAGA
ACGTCGATGATCTGGTGCGCCGTGCTCGACGCCTCGGCGAATTGGTCAGC
CAGTCCCAAAGCCTCGAGCAGACGCCTGGCCCAGATCGACGTTTACTAAC
AGCGAATGCAGTCCCTGCGCCAGCGTATCATCAGAAGACACAGCTCGCCT
GGGGGATGGCGCCCCGTACTGCGCCGATCGGAGGCCGCA
UFO05465.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msp300-RI | 36339 | CG42768-RI | 23145..24220 | 8..1070 | 4810 | 97.5 | Plus |
| Msp300-RH | 37913 | CG42768-RH | 23145..24220 | 8..1070 | 4810 | 97.5 | Plus |
| Msp300-RG | 43121 | CG42768-RG | 843..1918 | 8..1070 | 4810 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5154578..5155217 | 8..647 | 3200 | 100 | Plus |
| 2L | 23513712 | 2L | 5155321..5155527 | 647..850 | 870 | 98.1 | Plus |
| 2L | 23513712 | 2L | 5155591..5155768 | 858..1032 | 515 | 92.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:32:52 has no hits.
UFO05465.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:19 Download gff for
UFO05465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msp-300-RD | 23917..24963 | 1..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:02 Download gff for
UFO05465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msp-300-RG | 835..1881 | 1..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:39 Download gff for
UFO05465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msp300-RG | 835..1881 | 1..1037 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:39 Download gff for
UFO05465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5154570..5155217 | 1..647 | 99 | -> | Plus |
| 2L | 5155322..5155534 | 648..856 | 97 | -> | Plus |
| 2L | 5155589..5155774 | 857..1037 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:02 Download gff for
UFO05465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5154570..5155217 | 1..647 | 99 | -> | Plus |
| arm_2L | 5155322..5155534 | 648..856 | 97 | -> | Plus |
| arm_2L | 5155589..5155774 | 857..1037 | 92 | | Plus |
