UFO05466.5prime Sequence
1143 bp (1014 high quality bases) assembled on 2009-07-06
> UFO05466.5prime
CAGTCGACATGCACAATTGCAGCTATTTATTTGATCCCCTCTACCTCTTT
AGTAATCTGCCCTCGGATATCAAATGGAGCATTATCGACAGGTGGGGCAC
TCATCCACTTCTAATCAAAACGTTTGCCCAGCGAATTCGCGACGAGCTGG
CCAAATTTGTGGAAACGAAACGAAATGATGTGGTCATCCTCTTCACTGCC
CACTCCCTTCCCCTTAAGGCTGTGAACCGGGGTGACGCGTATCCCTCGGA
GATTGGTGCTAGCGTACACATGGTGATGCAGGAACTTGGTCAGACGAATC
CCTACAGCCTGGCATGGCAATCCAAGGTGGGCCCGCTACCCTGGCTGGCG
CCCGCAACTGATGATGCCATTAAGGGCTATGTTAAGCAAGGCCTGAAGAA
CTTCATCCTTGTGCCCATTGCCTTCGTGAACGAGCACATCGAGACGCTGC
ATGAGCTCGACATCGAGTACTGCGACGAACTGGCCAAGGAGGTAGGCGTA
GAGGAAATCCGTCGAGCTGCAACCCCCAACGACCACCCGCTGTTCATCGA
CGCCCTGACAAACGTTGTGGCAGACCACCTGAAGTCCCAGCAGGCAGTCA
ACCCCAAGTTCCTCATGCGTTGTCCCATGTGCTCCAATCCAAAGTGCAGG
GAGAGCAAAAGCTGGTACCGCCAGCTCTGCTCGAACGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAATTACGCCCCGGCCTGCCACTCATCGCAGTAC
TGTTGGTAATTCATTAAGCATTCTGCCGACATGGGAGCAACCACAAACGG
CATGATGAACCTGAATCGCCAGCGCATCAGCACCTTGTTCGCTTGCGTAT
AATATTGCATGTGAAACGGGGGGCGAAAAGTGTCTAATGCCGTTTATCAA
CTGGTGAACTCACCAAGATGCTGAAACGAAAAACAATTTCCAT
UFO05466.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FeCH-RB | 1338 | CG2098-RB | 492..1169 | 9..686 | 3390 | 100 | Plus |
| FeCH-RA | 1407 | CG2098-RA | 605..1238 | 53..686 | 3170 | 100 | Plus |
| FeCH-RC | 1466 | CG2098-RC | 605..927 | 53..375 | 1615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31810999..31811365 | 375..9 | 1835 | 100 | Minus |
| 3R | 32079331 | 3R | 31810629..31810942 | 686..373 | 1570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:45:39 has no hits.
UFO05466.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:20 Download gff for
UFO05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ferrochelatase-RB | 483..1174 | 1..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:15 Download gff for
UFO05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FeCH-RB | 483..1174 | 1..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:26 Download gff for
UFO05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FeCH-RB | 483..1174 | 1..692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:26 Download gff for
UFO05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31810624..31810940 | 375..692 | 99 | <- | Minus |
| 3R | 31811000..31811373 | 1..374 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:15 Download gff for
UFO05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27636346..27636662 | 375..692 | 99 | <- | Minus |
| arm_3R | 27636722..27637095 | 1..374 | 98 | | Minus |
