UFO05468.5prime Sequence
1126 bp (980 high quality bases) assembled on 2009-07-06
> UFO05468.5prime
CAGTCGACATGATCAGCTTAGCCCCCCTGATCATCCTAGTCCTCGCTTGC
CTGGGAAACACGGCCAGCGAGAAGTTGCCCAACATTCTGCTGATCCTGTC
CGACGATCAGGATGTGGAGCTGCGCGGTATGTTTCCCATGGAGCATACGA
TCGAAATGCTGGGTTTCGGTGGCGCCCTGTTCCACAACGCCTACACGCCC
TCGCCCATCTGCTGTCCGGCGAGGACGAGTCTGCTGACGGGCATGTATGC
GCACAATCACGGCACCCGGAACAATTCCGTAAGTGGTGGATGCTACGGAC
CACACTGGCGGCGAGCGCTGGAGCCCCGGGCCTTGCCATACATCTTGCAG
CAGCACGGATACAACACCTTCTTTGGCGGGAAGTACTTGAATCAGTACTG
GGGTGCTGGGGATGTGCCAAAGGGTTGGAACCACTTCTATGGCCTTCACG
GGAACTCTAGATACTATAACTACACACTGCGCGAAAATAGCGGCAACGTG
CACTACGAGTCCACCTACCTAACCGATCTGCTAAGAGATCGCGCCGCTGA
CTTTCTAAGAAATGCTACACAATCCTCGGAACCGTTCTTCGCGATGGTCG
CCCCACCGGCAGCCCATGAACCCTTCACTCCGGCACCAAGACATGAGGGT
GTGTTCTCCCATATCGAAGCCCTGCGCACACCCAGCTTCAATCAAGTTAA
GCAGATAAGCACTGGTTGGTGCGAGCAGCACGTCGTCTGCCCAACGAAAC
CATCAACACCATAGACACGTATTTCCAGAAACGCTGGGAAACGCTGCTGG
CCGGGACGAACTGGTCGTCACCTTGATGGGAGTGCTAAACGATACGCAAT
CGTTGGAGAACACCTACATTATCTACACCCTCGGATAACGGCTACCATGG
GGGGGCAGTTTGCACAGCCCTTCGATAAGAGACAGCCCTACGAAACGGAT
ATTAACGTACCGCTGCTAATCCGGGGACCTGGAATAGCACCTGAAAGGCA
CATTGACACTGCCGTCAGTCTAATGGACTTGGCACCGACTAATTGGCCTG
GGCGACTCGAACAACATTCTACTGGATGGCATCATTCACGAGCTTTGCTC
ACAAAAGGCAGTTCAATTTCAGCGTT
UFO05468.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18278-RA | 1677 | CG18278-RA | 70..1181 | 8..1109 | 5130 | 98.2 | Plus |
| CG30059-RA | 1683 | CG30059-RA | 76..1187 | 8..1109 | 4920 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13409069..13409762 | 704..11 | 3470 | 100 | Minus |
| 2R | 25286936 | 2R | 13413796..13414489 | 704..11 | 3260 | 98 | Minus |
| 2R | 25286936 | 2R | 13408662..13409012 | 1053..703 | 1505 | 97.7 | Minus |
| 2R | 25286936 | 2R | 13413389..13413739 | 1053..703 | 1505 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:18:32 has no hits.
UFO05468.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:22 Download gff for
UFO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18278-RA | 130..1247 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:55 Download gff for
UFO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18278-RA | 64..1181 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:34 Download gff for
UFO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18278-RA | 64..1181 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:34 Download gff for
UFO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13408597..13409005 | 710..1109 | 95 | <- | Minus |
| 2R | 13409063..13409767 | 1..709 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:55 Download gff for
UFO05468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9296102..9296510 | 710..1109 | 95 | <- | Minus |
| arm_2R | 9296568..9297272 | 1..709 | 99 | | Minus |
