Clone UFO05469 Report

Search the DGRC for UFO05469

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:54
Well:69
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG2924-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05469.5prime Sequence

1106 bp (998 high quality bases) assembled on 2009-07-06

> UFO05469.5prime
CAGTCGACATGGCGTGCCTTAACACCCTGAAGCAGGAAATCAAAACGCTA
GAGAAGATCTTCCCGAAGAACCACGAGCGCTTTCAGATCCTCAATTCCAG
CGTCGACGAACTGCTCTGCCGTTTTATCGATAAGAATGGAAAGCGGTACG
ATATTCACGCCAACATAACGGAAACGTATCCCTCATCGCCGCCAGTTTGG
TTCGCCGAAAGCGAGGAGACGAGCGTCACAAATGCTGTTCAAATACTTAG
CAATACGAATGGACGTGATAATCACGTGATCAATCAGGTGGGCATACTGC
TGCGTGAGCTGTGCCGCCTTCACAACGTTCCACTGCCACCCGACATCGAT
AATTTGGCTCTGCCGCTGCAAACGCCGCCGCCATCCGCTTCCCCCCTTCG
CTGCGAGCAGAGACCAGGTGGTGGTGGAGCGGGGGGCGGTGGCGGACCCC
ACGGCAACGAGGAGACCGATTCGGATCAGGAGGAGATCGAGGATCCCATC
GGCGAGAGCGAACAGGAGAGCGAGGGCGATGAGGACTTGCCGCTGGAAAT
GGATGATGTACGCAGTACAAGCAAGAAGGACGACATGGAAGTGGAACACC
TAGCGACTCTAGAAAAACTGCGTCAAAGTCAGAGACAAGACTATCTAAAA
GGTTCCGTTTCGGGTTCCGTGCAGGCAACCGATCGCTTAATGAAGGAATT
ACGCGACATTTATCGCTCAGACGCCTTCAAAAAGAACATGTATTCTATTG
AGCTCGTCAATGAGTCGATTTACGAATGGAACATTCGCCTCAAGTCTGTC
GACCCGGACAGTCCGCTGCACAGTGATCTGCAATGCTCAAGGAGAAGGAG
GGCAAGGACAGCATACTGCTCAACATCCTGTTCAAGGAGACGTATCCCTT
CGAGCGCCATTTGTGCGCGTTGTCCATTCCGATTATCTCAGGCGGCTATG
TGCTCATCGGTGGGTGCCATCTGCATGGAATGCTGACCAACAGGCTGGAG
CTCGGCATATACCGTGGAGACGGTATCATGCAAATTGCATCACTTCTCCG
TCAAGGAAGCCGCATCATCCGGGCTACCAAGCCTGACCAAGCAATCAGTG
TCGAGC

UFO05469.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2924-RD 2606 CG2924-RD 619..1653 9..1039 4955 99 Plus
CG2924-RB 2717 CG2924-RB 730..1764 9..1039 4955 99 Plus
CG2924-RE 2928 CG2924-RE 669..1703 9..1039 4955 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2266820..2267110 575..285 1455 100 Minus
X 23542271 X 2266247..2266539 942..651 1320 99 Minus
X 23542271 X 2268937..2269099 171..9 815 100 Minus
X 23542271 X 2267174..2267294 290..170 605 100 Minus
X 23542271 X 2266596..2266673 651..574 390 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:26:30 has no hits.

UFO05469.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:23 Download gff for UFO05469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2924-RC 608..1664 1..1056 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:38 Download gff for UFO05469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2924-RA 663..1719 1..1056 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:10 Download gff for UFO05469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2924-RE 663..1719 1..1056 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:10 Download gff for UFO05469.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2266248..2266539 651..941 98 <- Minus
X 2266597..2266671 576..650 100 <- Minus
X 2266820..2267107 288..575 100 <- Minus
X 2267177..2267293 171..287 100 <- Minus
X 2268938..2269105 1..170 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:38 Download gff for UFO05469.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2160281..2160572 651..941 98 <- Minus
arm_X 2160630..2160704 576..650 100 <- Minus
arm_X 2160853..2161140 288..575 100 <- Minus
arm_X 2161210..2161326 171..287 100 <- Minus
arm_X 2162971..2163138 1..170 97   Minus