UFO05470.5prime Sequence
739 bp (637 high quality bases) assembled on 2009-07-06
> UFO05470.5prime
CAGTCGACATGCCTCATACACACAGCAGGCATGGATCATCAGGAGATGAT
TTATGCAGTACTGATGAAGTGAAGATTTTTAAAGACGAAGGAGATCGCGA
GGATGAAAAAATATCATCTGAGAACTTATTAGTTGAAGAAAAGTCTAGCT
TAATAGATTTAACTGAAAGTGAGGAAAAGGGTCACAAAATTTCAAGGCCG
GACCACAGCCCTGTTTTTAATAAGCTGGACACCCACGCCCCTAGCTTTAA
CATGGGTTACTTAGTTTCTCCTTATTCGTATGCCAATGGTTCTCCAAGTG
GCTTACCGGTAACTATGGCCAACAAAATTGGACTGCCTCCGTTTTTTTGT
CACAATGCTGATCCGTTATCAACACCACCACCAGCGCATTGCGGAATTCC
TCCATATCAACTGGATCCTAAGATGGGCTTAACTCGACCAGCGCTATACC
CATTTGCGGGAGGTCAATATCCTTACCCAATGCTAAGTTCAGATATGTCT
CAAGTGGCATCATGGCACACTCCTTCTGTTTATTCTGCATCTAGTTTTAG
AACTCCTTATCCCTCCTCACTACCAATAAATACTACACTTGCAAGTGATT
TTCCATTCCGTTTTCACTAGCTTTTACTCAGTACATGCACATCGCACACG
TATAAATGCTCATTCTGCTATTGGTGGGGGTAGCTCTAACAAGAATGGGT
GTTCAGACCAACACGAATATAGAATTCAGACTGAGCCAG
UFO05470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pan-RS | 3101 | CG34403-RS | 697..1421 | 8..719 | 3265 | 97.9 | Plus |
| pan-RR | 8472 | CG34403-RR | 438..1162 | 8..719 | 3265 | 97.9 | Plus |
| pan-RI | 3795 | CG34403-RI | 697..1421 | 8..719 | 3265 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 72429..72595 | 8..174 | 835 | 100 | Plus |
| 4 | 1348131 | 4 | 82637..82747 | 317..427 | 555 | 100 | Plus |
| 4 | 1348131 | 4 | 75068..75166 | 220..318 | 495 | 100 | Plus |
| 4 | 1348131 | 4 | 85711..85800 | 426..515 | 450 | 100 | Plus |
| 4 | 1348131 | 4 | 85852..85933 | 514..595 | 410 | 100 | Plus |
| 4 | 1348131 | 4 | 72815..72867 | 172..224 | 250 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:58:24 has no hits.
UFO05470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:09 Download gff for
UFO05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RD | 271..1006 | 8..728 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:24 Download gff for
UFO05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RI | 697..1432 | 8..728 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:24 Download gff for
UFO05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RI | 697..1432 | 8..728 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:24 Download gff for
UFO05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 72429..72594 | 8..173 | 100 | -> | Plus |
| 4 | 72817..72862 | 174..219 | 100 | -> | Plus |
| 4 | 75068..75165 | 220..317 | 100 | -> | Plus |
| 4 | 82638..82746 | 318..426 | 100 | -> | Plus |
| 4 | 85712..85799 | 427..514 | 100 | -> | Plus |
| 4 | 85853..85933 | 515..595 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:24 Download gff for
UFO05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 93055..93220 | 8..173 | 100 | -> | Plus |
| arm_4 | 93443..93488 | 174..219 | 100 | -> | Plus |
| arm_4 | 95694..95791 | 220..317 | 100 | -> | Plus |
| arm_4 | 103264..103372 | 318..426 | 100 | -> | Plus |
| arm_4 | 106338..106425 | 427..514 | 100 | -> | Plus |
| arm_4 | 106479..106559 | 515..595 | 100 | -> | Plus |
