UFO05471.5prime Sequence
1083 bp (961 high quality bases) assembled on 2009-07-06
> UFO05471.5prime
CAGTCGACATGTCCAGCCACGAGGAGGATGACCATGAGCACGAGAACGAG
CACGGCGAAGAGGTGGAGGAACAGGAGATCCACGTGGATGTGGACTCGGA
CTCGCGGATGTCATGTGGCAGCGGATCCGATGTGGATATGGACGGCGGCA
GCTGCTACGACGAGTCCGAAACGCCATTGAGCGAGTCCCTGCAGTCGGAG
CAGACGCGCTCCTCGTCCAGTGAGAATCTGCCCTTCAGCATATCACGCCT
GCTATCCAAGCCCTTCGAGACGAGTCACCACCACCACAACAACAACAACC
ACCTGCTCAGCAGCAGTCCGGGCTCCAGCAGCAACAACAACAACAGCGGC
GAAAAGGGCGAGGAGAAGGAGCTACTGCAGCAGGAGGACCACGACCTGGC
CTATAAGCTGGCCACCAGCATCGCCAACTCGACATACGGAAGCGCCGCAG
CACTATACTCGTATCCGCATCTCTATCCCTCAGCGGCCGGCGGTCATGTG
CTACGTGTACCGCCCCAGAGAACGCCGCTCACCTGGGCACTACCGCCACT
GCATCACGCGGCGCTGGCACATCAGGCGGTCAAGGATCGGTTGGCAGCTG
CCTTTCCGATCGCCCGACGGATCGGACATCCCTACCAGAATCGCACGCCG
CCGAAGAGGAAAAAGCCACGCACATCCTTCACGCGCATCCAGGTGGCCGA
GTTGGAGAAGCGCTTCCACAAGCAAAAGTATCTGGCATCCGCGGAGCGAG
CGGCACTGGCCCGCGGACTGAAGATGACCGATGCCCAGGTGAAGACGTGG
TTTCCAGAACCGACGCACCAAGTGGAGACGACAGACGGCCGAGAGCGCGA
GGCGGAGCGGCAGCGGCGAACAGACTGATGCTGTCCCTCCAAGGCGGAGG
CCATCAGCAAGGGATTCGCCGCCTCCTTCGGCACCCTGGTTCCCAGGGGG
GGCGTGAACGGGCACCGCTGCTGGTTGCACGACTACAGCCGTGGGCAGAG
GCGTCGCATGCGGCGGGCTGCCAGCTTTCTAGACATCGTTTGGCCGCGGC
CAGGTATGGCTAATCCTATCAATCCTATCTAAT
UFO05471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| C15-RA | 1856 | CG7937-RA | 273..1289 | 9..1021 | 4805 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21502252..21502669 | 180..597 | 2090 | 100 | Plus |
| 3R | 32079331 | 3R | 21507128..21507359 | 595..827 | 1115 | 99.6 | Plus |
| 3R | 32079331 | 3R | 21500258..21500430 | 9..181 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 21512047..21512247 | 826..1021 | 505 | 93.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:39:11 has no hits.
UFO05471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:10 Download gff for
UFO05471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 2..1020 | 7..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:16 Download gff for
UFO05471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 273..1289 | 9..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:11 Download gff for
UFO05471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 273..1289 | 9..1021 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:11 Download gff for
UFO05471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21500258..21500430 | 9..181 | 100 | -> | Plus |
| 3R | 21502254..21502669 | 182..597 | 100 | -> | Plus |
| 3R | 21507131..21507359 | 598..827 | 99 | -> | Plus |
| 3R | 21512049..21512247 | 828..1021 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:16 Download gff for
UFO05471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17325980..17326152 | 9..181 | 100 | -> | Plus |
| arm_3R | 17327976..17328391 | 182..597 | 100 | -> | Plus |
| arm_3R | 17332853..17333081 | 598..827 | 99 | -> | Plus |
| arm_3R | 17337771..17337969 | 828..1021 | 94 | | Plus |
