UFO05472.5prime Sequence
1079 bp (982 high quality bases) assembled on 2009-07-06
> UFO05472.5prime
CAGTCGACATGCCGCGCACCAAGATACCAAAGAACTCCAAACGCAACCGC
GAGGTGGCCAATCGCGAAGAGAAGGTGCGCCTGTACGAGCTGAAAATGGA
TTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCTCTCCGCCG
TGGACCACCAGGTGAAGACACTGCTCGGCCAGGTGCAGAAGGAGCTGGCC
AATCTGAAGATGCCCGAAGTGCTGCGCCTCTTCGAGGAACTGGACCGCTT
CAGCGACTTCAAGGCCAGCGATCAGACGCAGCTGCTCGCCTCGATGTCCA
TGAGTGGCAGCGCCATCGAGGGCCACGCCCCCTCCGCCACTGGAAGTCGC
AATGACGAAGGCTACCTTACAGAGGACAGCAGCATCGGTGCCAGCGGTGG
GAGCATCCTGGCCGCCCACACAGGCTCCCTGCTGCGGTCCACGAAGGCCA
TGCGCACACCCGGACCACTGCACTCGGCGAGGGCTCGTCGAGCGCGGCGC
AGTCGTTCCGCCTGCGGGGATCTCAACATATTGCACTCGGCCAAACCGCC
GTCAATTTCGAGCAGCAGCAGCAGCAGCCGCAATTCGCGCAGCAAACTGC
GCACACCGATGGCCTCGCGTGCGAAGGCCTTCAGTGCCGACCGCACTCCT
TTGAAACAGAAGCAAATGCGCTCCGGATCGCCAACTACACCGCCGATGGC
ATTCCTGCGCTATCCCAAGCCCGGCGAGGTGGCACTATCCAAATACGGCA
GTCCCATGGTGGCTCAAGTAATGCCAGACAAGTTCGCCAATGTGAACATA
CCCATTCGGAACGGAGTTCTTAGCTTGCGGCCCAAAAAACTGGATGCCGA
CGAGTGGAGTCAAATCTGTTGGAGAACCTGGACGAGACACCCTTAACAGA
TCAAAACGCTGCACGAGAACTTGCAGATGATTGTAATAAGCCAGCCAGGC
GGTGTTCAGCAGCTTTCTAGACCATTCGTTTGGCGCGGGCCCAGTAGTGT
CATATCATAATCATATCATAATCATAATCAAACTAGCTACAGGAGATCTG
TCATGACTAGTGCTGATTCTCCCAATAAA
UFO05472.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| borr-RB | 1298 | CG4454-RB | 133..1087 | 9..958 | 4650 | 99.5 | Plus |
| borr-RA | 1286 | CG4454-RA | 133..1075 | 9..958 | 4460 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9251942..9252352 | 769..359 | 2055 | 100 | Minus |
| 2L | 23513712 | 2L | 9252634..9252986 | 361..9 | 1765 | 100 | Minus |
| 2L | 23513712 | 2L | 9251683..9251876 | 958..770 | 720 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:18:26 has no hits.
UFO05472.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:11 Download gff for
UFO05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| borr-RB | 123..1095 | 1..967 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:50 Download gff for
UFO05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| borr-RB | 125..1097 | 1..967 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:31 Download gff for
UFO05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| borr-RB | 125..1097 | 1..967 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:31 Download gff for
UFO05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9251673..9251876 | 770..967 | 96 | <- | Minus |
| 2L | 9251942..9252350 | 361..769 | 100 | <- | Minus |
| 2L | 9252635..9252990 | 1..360 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:50 Download gff for
UFO05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9251673..9251876 | 770..967 | 96 | <- | Minus |
| arm_2L | 9251942..9252350 | 361..769 | 100 | <- | Minus |
| arm_2L | 9252635..9252990 | 1..360 | 98 | | Minus |
