UFO05476.5prime Sequence
1113 bp (982 high quality bases) assembled on 2009-07-06
> UFO05476.5prime
CAGTCGACATGTCCGGAATCAACAGTCGTAATCAGAAAATGGAACAGCAG
CGCCAGCTGATGGAGGCCTACATCCGGCAGAAGAGAGCCTCGCCGGGAAT
GGTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGGGATGCGCA
GCAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGTTCATCAGT
TCGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCCGGCGGCAT
CAATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAACATGCGCA
GCCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGATCTCATCG
CACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATTGAGCAGCA
CCAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCAGAAACCAC
GTGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATGACTACACC
AATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGCATGGCCTC
ATCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGGGACGGGGA
ACGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATATCGACCAG
TTCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGCCGCATTAC
GCGGGACAGGAAAGGGCATGGACCGCGGCCTCTTTCCCATCTACTACTTG
CATCTGGAACGTGACTACGGCAAGAAGATATTTCTGCTGGGAGGTCGCAA
ACGCAAGAGAGCAAGACATCCAACTACATTGTCAGCTGCGATCCCACGGA
TTTGTCTCGCAATGCCGATGGCTTCTGTGGCAAACTGCGCTCTAATGTCT
TTGGCACATCCTTCACGGTCTTTGACAACGGCAACAAGAAAGCACAGAGA
GTCCTCGACTCGACTGGCCGTCATCATTTATGACCCCACCATTTTGGATT
CAGGGGCACGCCACATGACTGTTTATACTGCCCGCATGACTGAGACGATC
AGCGTGTCAGAATCAGTCGCGATCAAACCCAGCATCTGACATGGAATGAA
ACTGACCACTCTG
UFO05476.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ktub-RB | 2496 | CG9398-RB | 649..1713 | 9..1067 | 4995 | 98.5 | Plus |
| ktub-RC | 2523 | CG9398-RC | 991..1740 | 324..1067 | 3420 | 97.9 | Plus |
| ktub-RC | 2523 | CG9398-RC | 649..964 | 9..324 | 1580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21122000..21122470 | 324..795 | 2310 | 99.8 | Plus |
| 2R | 25286936 | 2R | 21121626..21121903 | 47..324 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 21122524..21122717 | 792..982 | 805 | 97.9 | Plus |
| 2R | 25286936 | 2R | 21102576..21102617 | 9..50 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:52:31 has no hits.
UFO05476.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:28 Download gff for
UFO05476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| king-tubby-RB | 647..1721 | 9..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:07 Download gff for
UFO05476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 649..1723 | 9..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:29 Download gff for
UFO05476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 649..1723 | 9..1074 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:29 Download gff for
UFO05476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21102576..21102617 | 9..50 | 100 | -> | Plus |
| 2R | 21121630..21121903 | 51..324 | 100 | -> | Plus |
| 2R | 21122001..21122468 | 325..793 | 99 | -> | Plus |
| 2R | 21122526..21122716 | 794..981 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:07 Download gff for
UFO05476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16990081..16990122 | 9..50 | 100 | -> | Plus |
| arm_2R | 17009135..17009408 | 51..324 | 100 | -> | Plus |
| arm_2R | 17009506..17009973 | 325..793 | 99 | -> | Plus |
| arm_2R | 17010031..17010221 | 794..981 | 97 | -> | Plus |
