UFO05479.5prime Sequence
1103 bp (990 high quality bases) assembled on 2009-07-06
> UFO05479.5prime
CAGTCGACATGAAATTCCTCATCGTCTTCGTCGCCCTCTTCGCCATGGCA
GTGGCCCGCCCCAACCTTGCCGAGATCGTGAGGCAGGTCTCCGATGTTGA
GCCCGAGAAGTGGAGCTCCGACGTGGAGACCAGCGATGGCACCAGCATCA
AACAGGAGGGTGTCCTCAAGAACGCTGGCACTGACAACGAGGCCGCTGTC
GTCCACGGATCCTTCACCTGGGTGGATGAGAAGACCGGCGAGAAGTTCAC
CATCACATACGTGGCTGATGAGAACGGATACCAGCCCCAGGGCGCCCATC
TGCCCGTGGCACCAGTTGCTGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAA
CTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAAT
AAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTT
GCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGTATTCACTCCAGAG
CGATGAAAACGTTTCAGTTTGCTCATGGAAAACGTGTAACAGGTGAACAC
TATCCCATATCACCAGCTCCCGTCTTTCATTGCATACGAAATTCCGATGA
GCATTCATCAGCGGCAGAATGTGAATAAGCCGATAACTTGTGCTATTTTT
CTTTACGTCTTAAAAGCGTATATCAGCTGACCGGACTGGTTATAGGACTG
GAC
UFO05479.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp65Ab1-RA | 413 | CG32400-RA | 44..357 | 7..320 | 1570 | 100 | Plus |
| Lcp65Ab2-RA | 416 | CG18773-RA | 47..360 | 7..320 | 1570 | 100 | Plus |
| Cpr65Ax1-RA | 389 | CG34270-RA | 282..353 | 248..319 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6146720..6147033 | 7..320 | 1570 | 100 | Plus |
| 3L | 28110227 | 3L | 6149591..6149904 | 7..320 | 1570 | 100 | Plus |
| 3L | 28110227 | 3L | 6147567..6147638 | 319..248 | 225 | 87.5 | Minus |
| 3L | 28110227 | 3L | 6150438..6150509 | 319..248 | 225 | 87.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:57:10 has no hits.
UFO05479.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:29 Download gff for
UFO05479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab2-RA | 42..367 | 1..325 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:32 Download gff for
UFO05479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab1-RA | 36..361 | 1..325 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:39 Download gff for
UFO05479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab2-RA | 39..364 | 1..325 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:39 Download gff for
UFO05479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6146712..6147033 | 1..320 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:32 Download gff for
UFO05479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6139812..6140133 | 1..320 | 99 | == | Plus |
