UFO05481.5prime Sequence
1097 bp (1002 high quality bases) assembled on 2009-07-06
> UFO05481.5prime
CAGTCGACATGAGCGAACCGCTAGCATTGGCGAGCGGCGGCGTGGTGGAT
CCAACGGCCGCATCCACCAGCGTCACTATTTCGAACCTGCCACAGCCAAC
AGTTGCGCTGGGATCGGAATCTAAATCGTCCATGGACCTAGAGGATCCCC
GGAACAATAGATTCTTTCTCTGGAAATGGTTGTGTAACTGGACATCCAGC
TCACCAACTATGCTGCGTGCCGTGGAGAAGAAGATACTGTCGTACGTGAA
GCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGTGGGCGAAG
CGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGGAGGTGCCG
CTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGGGTGATGAA
CCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGACATCCTCG
GATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGCTGGTGTGC
GAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAGATGAACAT
CAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCATTGCCTCCA
GCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATACTAGCCGAT
CCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGCAAAACAAT
ACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCTAAATCCGT
TGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGGTGCAAAAG
ACGCGGCCAGACATTATGCGAAAGTTCCAGAGCACCATCGAGGAGGATAT
CAACTTGCTGCCGCAGTACATACACAGTGCAATGCGCAGGATTCCCAGCG
GTGAGTCCGCCCTTCCACACAATGATGCAATCCTTTGGATGGGCCAAGCA
CCCCATGATTCATCGCATCAAGGACGTGGCGCAGCGACATACCATCACGT
TCATCTACGCTCCCGTTCGTGATTGACTCGTCCGTCGGGGGAGAAGAATC
AAGTCGCAACGCCGCGAGCAATTTGGTGGACATCAAGATTCTTGACG
UFO05481.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1882-RG | 2695 | CG1882-RG | 351..1433 | 5..1089 | 5090 | 98.4 | Plus |
| CG1882-RF | 1756 | CG1882-RF | 153..1235 | 5..1089 | 5090 | 98.4 | Plus |
| CG1882-RA | 1954 | CG1882-RA | 351..1433 | 5..1089 | 5090 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7813279..7814224 | 142..1089 | 4170 | 98.3 | Plus |
| 2R | 25286936 | 2R | 7812854..7812993 | 5..144 | 685 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:33:08 has no hits.
UFO05481.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:32 Download gff for
UFO05481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RA | 346..1438 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:11 Download gff for
UFO05481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RA | 348..1440 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:49 Download gff for
UFO05481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RA | 348..1440 | 1..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:49 Download gff for
UFO05481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7812851..7812992 | 1..143 | 97 | -> | Plus |
| 2R | 7813281..7814231 | 144..1097 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:11 Download gff for
UFO05481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3700356..3700497 | 1..143 | 97 | -> | Plus |
| arm_2R | 3700786..3701736 | 144..1097 | 98 | | Plus |
