UFO05483.5prime Sequence
1031 bp (953 high quality bases) assembled on 2009-07-06
> UFO05483.5prime
CAGTCGACATGAGTTTTCATTTTGCTGTACTGACCCTTATTTTAACAGCC
TTCACAGTTTCTCTGTGTGCTGAACAAAAAATTACAAAGAGTGACGCAGG
TGAAATACGAATTTTCAAACGTCTTATTCCTGCCGATGTTCTACGAGATT
TTCCGGGAATGTGCTTTGCTTCAACTCGATGTGCCACTGTTGAGCCTGGA
AAGTCGTGGGACCTTACTCCATTCTGCGGTCGATCTACTTGTGTTCAAAA
TGAGGAAAATGATGCAAAGCTATTCGAACTCGTAGAAGACTGCGGCCCAT
TGCCACTGGCGAATGACAAATGTAAATTGGACACAGAGAAGACTAATAAA
ACCGCATCGTTTCCTTATTGCTGCCCCATCTTTACATGTGACCCCGGTGT
TAAATTGGAATACCCCGAGATCGGAAAGGATAATGACAAAAAGAATTCTG
AGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAAGCATTCTGCCGACATG
GTAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGGCATCAG
CACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGAGA
AGAAGTTGTCCATATGGCAACGTTTAAATCAGAACTGGTGAAACTCACCC
AGGGATTGGCCTGAGACGAAAACTTATTCTCAATAACCTTTAGGGAAATA
GGCCAGGTTTCCACCGATACACGCCCATCTTGGCGAATTTAGGGTAGAAA
CTGGCCGGAATCGCCCGGAATTCCCTCCCGG
UFO05483.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31997-RB | 729 | CG31997-RB | 158..601 | 9..452 | 2220 | 100 | Plus |
| CG31997-RA | 666 | CG31997-RA | 158..601 | 9..452 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 154782..154965 | 452..269 | 920 | 100 | Minus |
| 4 | 1348131 | 4 | 155765..155903 | 147..9 | 695 | 100 | Minus |
| 4 | 1348131 | 4 | 155026..155149 | 269..146 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:18:38 has no hits.
UFO05483.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:25 Download gff for
UFO05483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31997-RA | 150..593 | 9..452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:59 Download gff for
UFO05483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31997-RA | 158..601 | 9..452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:36 Download gff for
UFO05483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31997-RA | 158..601 | 9..452 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:36 Download gff for
UFO05483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 155765..155903 | 9..147 | 100 | | Minus |
| 4 | 154782..154965 | 269..452 | 100 | <- | Minus |
| 4 | 155027..155147 | 148..268 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:59 Download gff for
UFO05483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 175408..175591 | 269..452 | 100 | <- | Minus |
| arm_4 | 175653..175773 | 148..268 | 100 | <- | Minus |
| arm_4 | 176391..176529 | 9..147 | 100 | | Minus |
