UFO05485.5prime Sequence
900 bp (889 high quality bases) assembled on 2009-07-06
> UFO05485.5prime
CAGTCGACATGAGCGCGACCAGCACAATAGTTATGCCCGGTGAGCGAATT
GCGGCCATTGAGGAGCTGGCCAAGAGCAAGCGGGTGATACTCGGACCGGG
ACTGCGGCGTCTGGATGACACGGTGGTGGCTAGCAAGGCGGGCCCACTTC
GACACAAGGAACCCGGCACCTTCTGGGTGGACAACTACCAGAGAAGGTAC
ATCCCGGCACGCGGGGATCTCATTCTGGGCATTGTGCGAGCCAAGGCGGG
CGATCTGTACCGCGTGGACATCGGAGCAACGGACACAGCCTCCATATCGT
ATCTCGCCTTTGAGGCGGCCAGCAAGAAGAATCGCCCGGATCTGATCCCC
GGTGATCTGATTTACGCGAGAGTCCTGAATGCAAGCGCGGACATTGAACC
GGAGCTGGTCTGCGTCAACTCGGTGGGCAAAAGTGGCAAACTGGGCGTCC
TCACCGATGGATTCTTCTTCAAGTGCAGCCTGAATCTGGGAAGGATGCTG
CTGCGGGAAAACTGCCCTGTTCTCGCCGCTCTTACCCGGGAACTGCCCTA
CGAGATCGCTGTGGGAGTCAACGGCAGGATATGGTTGAAGGCCCATTCCC
TGAAAGAAACCGTGGCCCTCGCCAATGCCATTTCAGCGCTGGAGCAATCG
GGTATGTGCGGAAATCGACAAAATATGTGGCAATCTCGGAGACTTCCTGC
AGGCCGCAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCCGGTAAGTG
GTCATAATCATAATCATAATCATAATCGTAATCACAACTAGCCTAGGAGA
TCCCTGGTCATTGACTAGTGCTTGGATTCTTCGCCATAAAAACGTCCCGG
GGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGGAGTTCTTAC
UFO05485.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp40-RB | 1031 | CG31938-RB | 98..793 | 9..705 | 3460 | 99.9 | Plus |
| Rrp40-RA | 844 | CG31938-RA | 98..793 | 9..705 | 3460 | 99.9 | Plus |
| Eno-RE | 2664 | CG17654-RE | 113..362 | 705..455 | 1230 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1728829..1729524 | 9..705 | 3435 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-28 20:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1650..1688 | 752..790 | 114 | 76.9 | Plus |
UFO05485.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:36 Download gff for
UFO05485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31938-RA | 88..793 | 1..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:29 Download gff for
UFO05485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp40-RA | 91..800 | 1..713 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:46 Download gff for
UFO05485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp40-RA | 91..800 | 1..713 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:46 Download gff for
UFO05485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1728822..1729531 | 1..713 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:29 Download gff for
UFO05485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1728822..1729531 | 1..713 | 98 | == | Plus |
