UFO05487.5prime Sequence
1107 bp (994 high quality bases) assembled on 2009-07-06
> UFO05487.5prime
CAGTCGACATGTTGCGCATACGCCGTGTGAGCCACGTGCAGCTGCTCGTT
CTAATGGCAATCGTTGTGGTGGTGACGGCAAAACAGGAAAGTTCAACGCG
TCAATTCGGCGGTGGCCAGAACTTCGGCAACGGCCTGGGCCCCTCCTTTG
GTGGCGTGGGCGCTGGTGGTCTAGGGCCTGGGGCCGGGTTTGGACCCGGT
TCCGCAGCCGGATATCCGGGACAAGGCGGCTACGGACCAGCGCAGCAGCC
GGGCTGCCCGCTGTGCGATTCGTCGGTTTACTCGTACTGCTCGCACAAGA
TGGTACACGATGCCTGTTGCTGCGATTTTCCAGGCGGTGCCCCGCAGTTG
AGACCGCCCCAGTGTTTGTACTACGACTGCTCGCTGCTTTATGCCAAATC
CTGTTACGAGCACGCCCTCATCAAGAACTGCTGCTGCAATAATCCCTACG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAG
CCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTT
GTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGT
TGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGA
TTGGCTGAGACGAAAACATATTCTCAATAAACCCTTTAGGAATAGCAGGT
TTTCACCGTACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGAA
ATCGTCGTGTATTCCCTCGAGCGATGAAACGTTCAGTTGCTCATGGAAAA
CGGTACCAGGTGAACCTATCCCATATACAGTCACGTCTTCATGCATCGAA
ATTCGAT
UFO05487.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12540-RA | 772 | CG12540-RA | 113..553 | 9..449 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14496539..14496781 | 92..334 | 1200 | 99.6 | Plus |
| X | 23542271 | X | 14496903..14497021 | 331..449 | 595 | 100 | Plus |
| X | 23542271 | X | 14496247..14496334 | 9..96 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:55:52 has no hits.
UFO05487.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:40 Download gff for
UFO05487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 102..557 | 1..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:05 Download gff for
UFO05487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 102..557 | 1..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:04 Download gff for
UFO05487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 104..559 | 1..455 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:04 Download gff for
UFO05487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14496238..14496334 | 1..96 | 95 | -> | Plus |
| X | 14496544..14496780 | 97..333 | 100 | -> | Plus |
| X | 14496906..14497021 | 334..449 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:05 Download gff for
UFO05487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14390271..14390367 | 1..96 | 95 | -> | Plus |
| arm_X | 14390577..14390813 | 97..333 | 100 | -> | Plus |
| arm_X | 14390939..14391054 | 334..449 | 100 | == | Plus |
