UFO05488.5prime Sequence
1131 bp (1006 high quality bases) assembled on 2009-07-06
> UFO05488.5prime
CAGTCGACATGGCGGCAGGTCCAATTGCTGAACGCAACCAAGATGCCACC
ATCTATGCCGGCGGTCTTGACGACAAGGTGTCGGAAACGCTGCTTTGGGA
GCTGTTTGTCCAGGCAGGACCAGTGGTGAACGTACACATGCCCAAGGATC
GTGTCACCCAAATGCACCAGGGCTATGGATTCGTCGAGTTCCTCAGCGAG
GAAGACGCCGACTATGGAATAAAGATCATGAACATGATCAAGCTTTACGG
CAAGCCCATTCGCGTGAACAAGGCGTCGGCGCATCAGAAGAACCTGGACG
TCGGCGCCAACATCTTCATTGGCAACCTAGACGTGGAAGTGGACGAGAAG
CTGCTGTACGATACGTTCTCCGCCTTCGGCGTTATACTGCAGACGCCGAA
GATCATGCGAGACCCAGAGACGGGCAAGTCTAAGAGCTTTGCGTTCATCA
ACTTTGCCAGCTTCGAGGCCAGCGATGCGGCCATGGACGCCATGAACGGC
CAGTACCTGTGCAACCGTCCCATTTCCGTGTCCTATGCCTTCAAGAAGGA
TCACAAGGGCGAGCGTCACGGTTCGGCTGCGGAGCGCCTGTTGGCCGCCC
AGAATCCATCGACCCATGCAGACCGGCCGCATCAATTGTTCGCCGATGCA
CCGGTGCAAACCATGATGCCCCAGATGCCGGGCCAGATCCCGGCCCAGAT
GCCGGGCCAGATGATGCCGCCACCCATGATGGCGCCGCCGCCGCCGGTGG
TGCCCGTTTCGAATAACAATATGGGCATGCTAGCACCGCCGCCGCCCGTT
CCCCAGCCTGCACCGTTCCCAGCTACGATACCGCCGCCTCCGTTGCCACC
GATGACCGGCGGACAGCCGCCGCTGCCGCCAGCAATGGGCATTCCGCCGC
CGCCTCGCATGATGCAACCAAATGCATGGGCACCGCCCGGCATGCCTGCT
CCTCCGCCCAGAACACCGCCCACCAACTGGCGTCCGCCGCCGTGCCCTTC
CCACCCACGCCCTACGCACGGCCTATCACCCGACGGCTACAGTTACGCAA
GCTTTCTAGAACATTCGTTGGCCGCGGCCCAGGTATGGTCTATCCTAACC
TATCTAATCTAATCCACCTAGCCTAGGATCT
UFO05488.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spx-RA | 1643 | CG3780-RA | 86..1124 | 5..1040 | 5090 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6256160..6257058 | 126..1023 | 4430 | 99.8 | Plus |
| X | 23542271 | X | 6256017..6256102 | 41..126 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:46:24 has no hits.
UFO05488.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:42 Download gff for
UFO05488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spx-RA | 69..1123 | 1..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:19 Download gff for
UFO05488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spx-RA | 80..1134 | 1..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:24 Download gff for
UFO05488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spx-RA | 80..1134 | 1..1051 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:24 Download gff for
UFO05488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6256019..6256102 | 43..126 | 100 | -> | Plus |
| X | 6256161..6257087 | 127..1051 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:19 Download gff for
UFO05488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6150052..6150135 | 43..126 | 100 | -> | Plus |
| arm_X | 6150194..6151120 | 127..1051 | 99 | | Plus |
