UFO05489.5prime Sequence
1118 bp (994 high quality bases) assembled on 2009-07-06
> UFO05489.5prime
CAGTCGACATGAAGCTGTTCTTATCCGTTTTCGTGGTAGCCCTGGTGGCC
GGCGTCGTTGTTGCCGACGATAGCAAGGGTCCCAAAGTGACCGAGAAGGT
TTTCTTTGACATCACCATTGGCGGCGAGCCCGCTGGTCGCATCGAGATCG
GTCTGTTCGGCAAGACGGTGCCCAAGACGGTGGAGAACTTCAAGGAGCTG
GCGCTGAAGCCGCAGGGCGAGGGCTACAAGGGCAGCAAGTTCCACCGCAT
CATCAAGGACTTCATGATCCAGGGCGGTGACTTCACCAAGGGCGACGGCA
CCGGCGGTCGCTCCATCTACGGCGAGCGCTTCGAGGATGAGAACTTCAAG
CTGAAGCACTATGGCGCCGGCTGGCTGAGCATGGCCAACGCTGGCAAGGA
CACCAACGGATCGCAGTTCTTCATCACCACCAAGCAGACCAGCTGGCTGG
ATGGACGCCACGTCGTCTTCGGCAAGATCCTGTCGGGCATGAATGTGGTG
CGCCAGATCGAGAACTCGGCCACTGATGCCCGCGACCGTCCCGTCAAGGA
TGTGGTCATCGCCAACAGCGGCACCCTGCCCGTTTCGGAGGCCTTCTCCG
TGGCCAAGGCCGATGCCACCGACGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTAATTCAT
TAGCATTCTGCGACATGGAAGCCATCACAAACGGCATGATGAACCTGATC
GCCAGCGGCATCAGCACCTTGTCGCTTGCGTATAATATTTGCCCATGTGA
ACGGGGGCGAAGAGTTGTCATATTTGCCACGTTTAATCAACTGGTGACTC
ACCAGGATGCTGAAACGAAAACTTTCCAATAACCTTAGAAGTGCCAGTAC
GTAACGCCACTTGCAATA
UFO05489.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2852-RD | 1177 | CG2852-RD | 74..688 | 9..623 | 3075 | 100 | Plus |
| CG2852-RA | 882 | CG2852-RA | 74..688 | 9..623 | 3075 | 100 | Plus |
| Cyp1-RA | 1227 | CG9916-RA | 365..561 | 225..421 | 280 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22645135..22645535 | 623..223 | 2005 | 100 | Minus |
| 2R | 25286936 | 2R | 22645921..22646047 | 223..97 | 635 | 100 | Minus |
| 2R | 25286936 | 2R | 22646180..22646271 | 100..9 | 460 | 100 | Minus |
| X | 23542271 | X | 16318339..16318535 | 421..225 | 280 | 76.1 | Minus |
| 2R | 25286936 | 2R | 6675226..6675432 | 428..222 | 225 | 73.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:18:44 has no hits.
UFO05489.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:50 Download gff for
UFO05489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 76..695 | 9..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:05 Download gff for
UFO05489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 74..693 | 9..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:39 Download gff for
UFO05489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 74..693 | 9..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:39 Download gff for
UFO05489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22645130..22645534 | 224..628 | 99 | <- | Minus |
| 2R | 22645921..22646045 | 99..223 | 100 | <- | Minus |
| 2R | 22646182..22646271 | 9..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:05 Download gff for
UFO05489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18532635..18533039 | 224..628 | 99 | <- | Minus |
| arm_2R | 18533426..18533550 | 99..223 | 100 | <- | Minus |
| arm_2R | 18533687..18533776 | 9..98 | 100 | | Minus |
