UFO05492.5prime Sequence
1097 bp (952 high quality bases) assembled on 2009-07-06
> UFO05492.5prime
CAGTCGACATGGCCAACAAAGTGCTGCGAAAGGTGACGCACTGCGTCTTC
GACATGGACGGTCTGCTGCTGGACACCGAACGCCTTTATACTGTGGCCAC
CGAAATGATCCTCGAGCCCTACGGCAAGACATATCCCTTTGAGATCAAGG
AGCAGGTCATGGGCCTGCAGACGGAACCGCTGGCCCGGTTCATGGTCGAG
CACTACGAGCTGCCGATGTCGTGGGAGGAGTACGCACGCCAGCAGCGCGC
CAACACCGAGATCCTGATGCGGAACGCCCAGTTGATGCCAGGTGCTGAGC
GCCTGCTGCGTCACCTGCACGCCAACAAGGTACCCTTTTGCTTGGCCACC
AGCTCCGGCGCCGACATGGTCGAGCTGAAGACGGCCCAACATCGGGAGCT
GTTCTCCCTGTTTAACCACAAGGTGTGCGGTTCGTCGGACAAGGAGGTGG
TCAACGGCAAGCCTGCGCCCGACATTTTCCTAGTGGCCGCCGGCAGATTC
GGTGTGCCGCCCAAACCGTCCGACTGCCTGGTGTTCGAGGACTCGCCGAA
CGGCGTGACGGCTGCCAACAGCGCCGGAATGCAGGTGGTGATGGTGCCGG
ACCCACGACTGTCCCAGGAAAAGACCTCGCACGCCACACAAGTGCTGGCC
TCGTTGGCGGACTTCAAGCCGGAGCAGTTCGGGCTGCCCGCCTTCACGGA
TGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
TTTATCAACAGGAGTCCAGCGGAGCTCGATATCAAATTACCGCCCCGCCC
TGCAATCATCGCAGTACTGGTGTAATTCATTAAGCATTCCTGCCCGAACA
TGAAGCCATCCCAAACGCATGATGACTTGATTCGCAGCGGCAATCAGAAC
TTGTTCGCCTTGGCGTATAATATTGCCATGGTGAAACGGGGGCGAGA
UFO05492.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gs1l-RA | 984 | CG15441-RA | 152..848 | 5..701 | 3470 | 99.9 | Plus |
| Gs1l-RB | 1038 | CG15441-RB | 435..846 | 290..701 | 2060 | 100 | Plus |
| Gs1l-RB | 1038 | CG15441-RB | 150..221 | 5..76 | 345 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4455329..4455740 | 701..290 | 2060 | 100 | Minus |
| 2L | 23513712 | 2L | 4456112..4456333 | 293..72 | 1110 | 100 | Minus |
| 2L | 23513712 | 2L | 4456386..4456453 | 72..5 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:36:24 has no hits.
UFO05492.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:54 Download gff for
UFO05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs1l-RA | 164..870 | 1..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:29 Download gff for
UFO05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs1l-RA | 149..855 | 1..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:52 Download gff for
UFO05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs1l-RA | 149..855 | 1..709 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:52 Download gff for
UFO05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4455322..4455738 | 292..709 | 99 | <- | Minus |
| 2L | 4456114..4456332 | 73..291 | 100 | <- | Minus |
| 2L | 4456386..4456456 | 1..72 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:29 Download gff for
UFO05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4455322..4455738 | 292..709 | 99 | <- | Minus |
| arm_2L | 4456114..4456332 | 73..291 | 100 | <- | Minus |
| arm_2L | 4456386..4456456 | 1..72 | 95 | | Minus |
