UFO05493.5prime Sequence
1070 bp (981 high quality bases) assembled on 2009-07-06
> UFO05493.5prime
CAGTCGACATGTTCATTTTTCCCATACTGTTTGTTCAAATCGTGATTTCT
AATGTCATAAGGAGTCTCAAGCGCCGTCTCGCAAAGCCGCTGAAAATGTC
CGAGGACCTGGACGAGCTCTTCCTGACGCCCATTCCGGCGCCCTCGGCCG
TGGAGCTGCAGCAGTGCATACTGTTCGGCTTCCGGCGCCGCCTTCATCCC
GCCCAGATATTCGAGGAGTGCCGCAACGCCTTTGGGCCCTTCTGCCCCAG
TGCGCAGTACGTGGCGAAGTGGTACCAGCGGTTCCAGGACGGCTTCTTCA
ATCTGGACGAGAAGGACGACGAGGAGCTGAGGATCGGGCATGGCGGCACG
CCCACCACCTGCAGTGATTACGATGATGACAGTGATTGCGGGGAGGCGAC
CGTTCTGCCCCTGATCCTAAGTGAAATGATCCAACGCAGTGAGGAGGATG
ACGATGATGATGGTACTGATGGTTTTGAGAAGGAGAGTGATGATGGTCTA
GATGGTCATGTGATTGGTTATTGGCAGGGTTATGGCTATTTGGGTGGCAA
GCAAAGGTATAGTTGGGCTGGAACTAAACTTGGAAACTCGGCTTGCGAGC
TGCCCCCGCTGCCGAAATCTCTCATCGGCTTCAACAAGTTACTGTGCTCC
GATTCGGGACTCCTGAGTGATGTGGAAGGAAACAATAACAGCAGCGATGG
CAGCCGAAAACCAAACGACAATCTTGCTGTGGAGACACAGGATACCAAGG
AGCATGCCACCGATAAGTCACTGCCCTCCTCGCCGACGGAAACACATCCA
TACCACCAATGCTGGTGGCCAAATCCGAGGCCAAGTCCCCCAGCTTATCA
GCAAAGGAAACCCCCAGGCGGTCGAGGCGGGCAGCACTCTGGATGCCCAG
ATTGCGACGCTGCGGAAGGAAATGAACGGACTGCGTCACTAGATCTCTCG
TGCTGTCACAACTGTGGGTGCTACGATCGATCAGAGTTCCGCGCCTGATC
GAGATCAGAAACGAGATGAAGACGACAGTTGAAGTGAAGTGCAAACATCT
GGACGAGAGGCCACACGCCG
UFO05493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31038-RC | 2039 | CG31038-RC | 74..1105 | 9..1026 | 4800 | 98.4 | Plus |
| CG31038-RG | 2369 | CG31038-RG | 443..1435 | 48..1026 | 4605 | 98.4 | Plus |
| CG31038-RH | 2015 | CG31038-RH | 74..1081 | 9..1026 | 4430 | 96.1 | Plus |
| CG31038-RG | 2369 | CG31038-RG | 74..113 | 9..48 | 200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29896698..29897229 | 49..580 | 2660 | 100 | Plus |
| 3R | 32079331 | 3R | 29897300..29897645 | 581..924 | 1615 | 99.1 | Plus |
| 3R | 32079331 | 3R | 29895054..29895093 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:56:00 has no hits.
UFO05493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:21:01 Download gff for
UFO05493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-RC | 64..1096 | 1..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:10 Download gff for
UFO05493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-RC | 66..1098 | 1..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:08 Download gff for
UFO05493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-RC | 66..1098 | 1..1019 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:08 Download gff for
UFO05493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29895046..29895093 | 1..48 | 91 | -> | Plus |
| 3R | 29896698..29897229 | 49..580 | 100 | -> | Plus |
| 3R | 29897300..29897645 | 581..924 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:10 Download gff for
UFO05493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25720768..25720815 | 1..48 | 91 | -> | Plus |
| arm_3R | 25722420..25722951 | 49..580 | 100 | -> | Plus |
| arm_3R | 25723022..25723367 | 581..924 | 99 | -> | Plus |
