UFO05494.5prime Sequence
1077 bp (971 high quality bases) assembled on 2009-07-06
> UFO05494.5prime
CAGTCGACATGCACCTGAAACCACGGATAAAAGTATGCCAAGCGATTCTG
GGACATTGTCGATCCTTTGGAACGAGTCCTCCCGCTAATCAGTCGTTCAG
GAAGTGGTACCAGCACCTGTGGACCACGGAGCGCACAAACTTGCCGCCAT
ACAACCATTTCACCCAGATTGGTGACCCTGTTCTTAGGCAACAAGCGGCT
TTGGTGCCCAAGGAGCACATGGCTAGCCCCGAGATTAAGGCCATCGTCGA
GCGGATGGTCAAGGTGCTAAGGAAGTTCGACTGCGTCGGCATTGCGGCTC
CTCAGATTGGAGTATCGCTCAGGATCATAGCAATGGAGTTCAAGGGACGG
ATCCGAAAGGAGCTGCCCGAGGCCGTTTACCAAGCCCGACAAATGTCCGA
GTTGCCACTGACTATTTTCATCAATCCCGTCCTGACGGTGACCAACTACG
CGAAGCTGAAGCATCCAGAAGGATGCATGAGTGTGCGAGGTTACTCTGCC
GAAGTGGAGCGTTTCGAAGGTGTAAAGCTAACAGGCCTTGACCAACTAGG
AAACCAAAGCGAACTGGCTCTGAGTGGTTGGAATGCCCGGATAGCGCAGC
ACGAAATGGATCACCTGGAGGGAAAACTATACACCGATCACATGGACCGC
TCAACCTTTGCGTGCACCTGCTGGGAGGCGGTTAACACGAAATCCGGACG
CGTGGAGATACCCTTCTACAAGGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTTGAGGTCATTACTGGATTTATCAACAGGAGTCCAGCGAGCTCGATAT
TCAAATTACGCCCCGCCCTGCCACTCATTCGCAGTATTGTTGTAATTCAT
TAAGCATTCTGCCGACTGAGCCATACAAACCGCATGAATGAACCTGGATT
CGCAAGCGCATCAGACTTGTCGCCTTT
UFO05494.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31278-RA | 872 | CG31278-RA | 79..792 | 9..722 | 3570 | 100 | Plus |
| CG31278-RB | 883 | CG31278-RB | 79..803 | 9..722 | 3450 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10707858..10708262 | 413..9 | 2025 | 100 | Minus |
| 3R | 32079331 | 3R | 10707478..10707786 | 722..414 | 1545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:08 has no hits.
UFO05494.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:34 Download gff for
UFO05494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31278-RA | 59..783 | 1..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:27 Download gff for
UFO05494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31278-RA | 73..797 | 1..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:45 Download gff for
UFO05494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31278-RA | 73..797 | 1..730 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:45 Download gff for
UFO05494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10707473..10707786 | 414..730 | 98 | <- | Minus |
| 3R | 10707858..10708268 | 1..413 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:27 Download gff for
UFO05494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6533195..6533508 | 414..730 | 98 | <- | Minus |
| arm_3R | 6533580..6533990 | 1..413 | 99 | | Minus |
