UFO05496.5prime Sequence
1062 bp (963 high quality bases) assembled on 2009-07-06
> UFO05496.5prime
CAGTCGACATGTCGACCCGTCGCCAGGCGATCACGTTATACAGGAATCTC
CTGCGCGAATCGGAGAAGCTGCCCTCGTACAACTTCAGAATGTACGCTGC
CCGAAAAATACGCGACACATTCCGCGCCAACAGGAGCACCAGGGACTTCG
CGGAGATCGATCGCCAAATGGCCGAGGGCCAACAGAATCTGGAGCTGATA
CGTCGCCAGGTAATCATCGGCCACCTGTATTCCGCTGACAAACTGGTTAT
AGAGAACAAGAAGACCCTGAAGCCCTCGGACGACGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATA
ATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCA
CGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAA
AACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTA
ACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGGAAATCGTCG
TGTATTCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCATGAAAACGTG
TACAAGGTGAACACTATCCATATCACAGCTCACGTCTTTCATGCATACGA
AATCGATGACATTCATCAGCGGCAGATGTGATCGCGATAAACTGTGCTTA
TTTCTTACGGTCTTAAAGGCGTATATCAGCTGACGCTTGGTTAGTACGTT
GACACTGACTGA
UFO05496.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcn92-RA | 748 | CG3717-RA | 167..442 | 9..284 | 1380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2149219..2149346 | 211..84 | 640 | 100 | Minus |
| X | 23542271 | X | 2149402..2149481 | 88..9 | 400 | 100 | Minus |
| X | 23542271 | X | 2148769..2148846 | 284..207 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:39:18 has no hits.
UFO05496.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:20:35 Download gff for
UFO05496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcn92-RA | 116..399 | 1..289 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:21 Download gff for
UFO05496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcn92-RA | 163..446 | 1..289 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:14 Download gff for
UFO05496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcn92-RA | 163..446 | 1..289 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:14 Download gff for
UFO05496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2148769..2148843 | 210..284 | 100 | <- | Minus |
| X | 2149221..2149341 | 89..209 | 100 | <- | Minus |
| X | 2149402..2149485 | 1..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:21 Download gff for
UFO05496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2042802..2042876 | 210..284 | 100 | <- | Minus |
| arm_X | 2043254..2043374 | 89..209 | 100 | <- | Minus |
| arm_X | 2043435..2043518 | 1..88 | 95 | | Minus |
