UFO05501.5prime Sequence
833 bp (-98 high quality bases) assembled on 2009-07-15
> UFO05501.5prime
CAATCGACATGAGCAGCGACAATCATTTTCAGTACTATGCGGAAACGGAC
AAGAGCTTCGCCTTCGATGACCAAAGCATCCGGAAGGGATTTCTTCGAAA
GGTCTACTTGATATTGATGTGCCAATTGCTGATCACTTTCGGTTTTGTTA
TCGTATTTACCTTCTCGAAAGCTTCGCAGGAATGGGTGCAAAAAAATCCG
GCACTGTTTTGGATAGCCTTGGCCGTTCTTATCGTGACCATGATCTGTAT
GGCCTGCTGCAAAAGTGTACGCCGTAAGACGCCTCTTAACTTCATCTTTC
TTTTCCTGTTCACCGTGGCGGAGTCGTTCCTTCTGGGTATGGTCGCCGGA
CAGTTTGAGGCTGATGAGGTCCTGATGGCAGTGGGAATTACGGCCGCGGG
GGCCCTGGGACTCACCCTGTTTGCCCTGCAAACCAAATACCATTTTACTA
TGTGCGGAGGAGTGTTGGTGGCCTGTCTGGTGGTCTTCATCATTTTTGGT
ATAATCGCTATCTTCATACCGGGCAAGGTGATCGGACTGGTCTATGCCTC
CTTGGGAGCATTGCTCTTCTCCGTTTACATGGTGTACGATAACCACTTGA
TGCTGGGTGGTAATCATAAGTACTCCATCAGTCCTGAGGAATACATCTTC
GCCGCTCTAAATCTCTACCTGGACATTATTAACATCTTCATGTACATACT
GAACATTATCGGATTGTCTCGAATGCAAGCTGTTCTAGACCATTCGTTTG
GCGCGCGGGCCCACGTACGTGGTCATAATCGTATTCATATCATAATCATA
CTCCCACTAGCCTAGGGATCCTGATCATGACTA
UFO05501.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-RD | 933 | CG3814-RD | 104..817 | 8..721 | 3330 | 97.8 | Plus |
| CG3814-RA | 1073 | CG3814-RA | 244..957 | 8..721 | 3330 | 97.8 | Plus |
| CG3814-RC | 1011 | CG3814-RC | 211..895 | 37..721 | 3200 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12875280..12875780 | 721..221 | 2355 | 98 | Minus |
| 2R | 25286936 | 2R | 12875841..12875944 | 222..119 | 490 | 98.1 | Minus |
| 2R | 25286936 | 2R | 12876101..12876183 | 119..37 | 370 | 96.4 | Minus |
| 2R | 25286936 | 2R | 12877671..12877960 | 712..423 | 325 | 74.1 | Minus |
| 3R | 32079331 | 3R | 14152993..14153147 | 697..543 | 280 | 78.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:02:43 has no hits.
UFO05501.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:27 Download gff for
UFO05501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RA | 369..1095 | 1..724 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:59 Download gff for
UFO05501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RA | 235..961 | 1..724 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:07 Download gff for
UFO05501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RA | 235..961 | 1..724 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:07 Download gff for
UFO05501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12876101..12876183 | 37..119 | 96 | <- | Minus |
| 2R | 12875280..12875779 | 222..721 | 98 | <- | Minus |
| 2R | 12875842..12875943 | 120..221 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:59 Download gff for
UFO05501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8762785..8763284 | 222..721 | 98 | <- | Minus |
| arm_2R | 8763347..8763448 | 120..221 | 98 | <- | Minus |
| arm_2R | 8763606..8763688 | 37..119 | 96 | <- | Minus |
