UFO05503.5prime Sequence
1127 bp (1007 high quality bases) assembled on 2009-07-15
> UFO05503.5prime
CAGTCGACATGCTTACGCTGCAAATTTTTGAGGCATTTGCAATCATTTTA
TGTGTATACTTTCTATGGAGTCGAAGAAGATTTTATATTATGATGCTAAA
GTTACCAGGACCAATGGGCTTTCCGTTTATCGGACTTGCCTTTGAGTACA
TTCGCCTAAAACGTAAGATACGCCTACGTACCATTTTATTTAAAATATAT
GGAAAAACGGTATTGACTTGGATTGGCTTAACTCCCGTCCTGGTGACCTG
TGAACCTAAGATCCTTGAGGACATTTTCACGTCTCCCAATTGCAGCAACA
GGAGTTCTGTGGTGGACAAGGCCATTTCATCATGTTTAGGACTGGGCCTT
CTGACCCTAAAGAATAATCATTGGAATGAACGACGAAAACTTTTGTTACC
ATCGTTTAAGAATAATGCTGTTCTAAGTTTTGTGCCAGTTTTAAACAATG
AAGCCAATTTCCTGGTGACCTTACTCGCGGAATTTGTCGATGGGGGAGAT
ATAAACTTACTTCCAGAACTCAATAAATGGTCATTCAAAATAGCCGCTCA
AATTACTATGGGTGATGAAGTGAGAAATCAAGCGAACTACCAGAACGGAA
ATCTTTTGGAAAGCTACAAGGCCCTTAACAACCTAATACCCATTGGTGTT
GTAATGCCTTGGCTCAGGAACAAGTATCTTGGAAAGCTATTTAGCTATGA
AAAACGACGACTAGAGGCCGCAACGCAGTCAAATGCATTCATCAAAGACA
TAATAGACAAAAAGCTGAGTAGCACAGATAATAGCTCAGACCCGGCACTA
ATTGACCGCATTCTCAATCTTGTGAGAATCGGAGAACTTTCTTATGACGA
CGTAATGGGGGAATTTTCTAATATCATATTTGCCGCATCCGATACTTTAT
CTATACAGTCAACATGTGCTTATCCTGATGGCATGTTTCTAAATACCAGG
ATATGTATTTGAGGAGCTAGCAGAGGTGTTTCCTTCAGGAGGAGATCGAG
CAGTCATGCGATCTGGAGAAATATGAAGCTGATCGAGTTTGCATGAGAAC
TATGCGTTTAATACGGCGTTCATTACTGATAGCAACTCCATTCTATTCAC
TATCAACGAATTTAATTCCGAGGGGTA
UFO05503.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313a5-RA | 1561 | CG15807-RA | 38..1157 | 9..1106 | 5005 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12234233..12234437 | 367..163 | 995 | 99 | Minus |
| 3R | 32079331 | 3R | 12233380..12233630 | 995..750 | 990 | 97.6 | Minus |
| 3R | 32079331 | 3R | 12233992..12234177 | 549..364 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 12234489..12234647 | 167..9 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 12233685..12233811 | 749..623 | 635 | 100 | Minus |
| 3R | 32079331 | 3R | 12233869..12233941 | 622..550 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:58:44 has no hits.
UFO05503.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:30 Download gff for
UFO05503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a5-RA | 29..1173 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:43 Download gff for
UFO05503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a5-RA | 29..1173 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:22 Download gff for
UFO05503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a5-RA | 29..1173 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:22 Download gff for
UFO05503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12234237..12234437 | 163..363 | 99 | <- | Minus |
| 3R | 12234494..12234656 | 1..162 | 98 | | Minus |
| 3R | 12233685..12233811 | 623..749 | 100 | <- | Minus |
| 3R | 12233869..12233941 | 550..622 | 100 | <- | Minus |
| 3R | 12233992..12234177 | 364..549 | 100 | <- | Minus |
| 3R | 12233236..12233630 | 750..1119 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:43 Download gff for
UFO05503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8058958..8059352 | 750..1119 | 92 | <- | Minus |
| arm_3R | 8059407..8059533 | 623..749 | 100 | <- | Minus |
| arm_3R | 8059591..8059663 | 550..622 | 100 | <- | Minus |
| arm_3R | 8059714..8059899 | 364..549 | 100 | <- | Minus |
| arm_3R | 8059959..8060159 | 163..363 | 99 | <- | Minus |
| arm_3R | 8060216..8060378 | 1..162 | 98 | | Minus |
