UFO05504.5prime Sequence
954 bp (846 high quality bases) assembled on 2009-07-15
> UFO05504.5prime
CAGTCGACATGGTCGAGAAAACAGAAATGTCGAAATTCGTTGGCGTTGCC
GACATAACCGAGAACAAGAAAATCTGGCGCATGCTGCTCGGCGAACTGGT
GGGCACATTTTTCTTGATCTTCGTCGGCGTTGGCAGCACGACGAGCGGAA
GTGTACCACAAATCGCATTCACCTTTGGCTTGACGGTGGCCACCATCGCC
CAGGGCTTGGGCCACCTCAGTGGCTGTCACATTAATCCGGCGGTCACCCT
TGGATTCCTGATCGTTGGTGAGATCAGCATTCTGAAGGCTGCCTTCTACA
TCATCGTCCAATGCGTGGGCGCCATTGCTGGAGCGGCTGTGATAAAGGTG
GCACTCGATGGAGTGGCTGGTGGCGACCTGGGAGTATCCTCCTTTGATCC
CTCCCTGAACTGTGCACAGGCGGTGCTGATCGAAGCGCTGATCACCTTTA
TTTTGGTTTTCGTGGTCAAGGCTGTTTCGGATCCTGGACGCCAGGATATC
AAGGGATCAGCGCCACTGGCTGTTGGTTTGGCCATCGCCGCTGGCCATTT
GTGTGCAATCAAACTGAGCGGTGCCAGCATGAATCCCGCCCGGTCCTTTG
GTCCCGCCGTAGTGCAGGCGTCTGGACCTATCACTGGGTTTACTGGGTGG
GTCCCATTGCCGGCGGCCTGTTGGCCCGGAATCATCTACAGATTAATCTT
CAAGGTACGCAAGGCGATGATGAGACCGACTCGTACGACTTCGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATATCATAAT
CATAATCATATCATAATCACACTAGCCTAGAGATCCTGTCATGACTAGTG
CTGATCTCACATAAAAACGCCCGCGCACGACGTTCTGACATCGATGAGTT
CTGAGGTCATACTGATCTTTCAAGATCAAGCGAGCTCGATTCATACGCCC
GGCC
UFO05504.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drip-RB | 1444 | CG9023-RB | 277..1011 | 9..742 | 3605 | 99.6 | Plus |
| Drip-RA | 1745 | CG9023-RA | 578..1312 | 9..742 | 3605 | 99.6 | Plus |
| Drip-RE | 1180 | CG9023-RE | 27..747 | 23..742 | 3535 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11412632..11412988 | 557..201 | 1785 | 100 | Minus |
| 2R | 25286936 | 2R | 11421257..11421439 | 204..22 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 11412389..11412574 | 742..558 | 785 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:44:22 has no hits.
UFO05504.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:33 Download gff for
UFO05504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drip-RB | 246..990 | 1..746 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:30 Download gff for
UFO05504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drip-RA | 571..1315 | 1..746 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:48 Download gff for
UFO05504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drip-RA | 571..1315 | 1..746 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:48 Download gff for
UFO05504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11412385..11412574 | 558..746 | 97 | <- | Minus |
| 2R | 11412632..11412985 | 204..557 | 100 | <- | Minus |
| 2R | 11421258..11421436 | 25..203 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:30 Download gff for
UFO05504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7299890..7300079 | 558..746 | 97 | <- | Minus |
| arm_2R | 7300137..7300490 | 204..557 | 100 | <- | Minus |
| arm_2R | 7308763..7308941 | 25..203 | 100 | <- | Minus |
