UFO05505.5prime Sequence
1106 bp (994 high quality bases) assembled on 2009-07-15
> UFO05505.5prime
CAGTCGACATGAGCGGCAAGCGGACACGTAGCTTTAAGTGCGCCGTACAC
CATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTGGTGCTAAA
CGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCATGGAGATCC
TGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACACCTGCTGT
CCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTGGGTTTCTT
TGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGGACCCATAC
CCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACGAGATCTGG
CGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCATCTCGGTTT
TAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGATGGTTCATG
GTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGGCGGGAAGC
CTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGCGCCAGTGG
TGGAGTATACGCTTTGCTAGCCGCCCACCTGGCCAATGTGCTTCTCAACT
ATCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACATTCTGGTCTTC
GTTTCCTTCGACTTTGGCTTTGCCATCTATGCTCGCTATGCTGGCGACGA
CTGCAGCTGGGATCATCGAGTGAATTCCTGGCCATAGATCAGGCGGAAAC
GGCGGGTGCTGTTTCGTATGTGGCCCATTTGGCTGGTGCCATTGCTGGCC
TAACTATCGGGCTGCTGGTGCTCAAGAGCTTTGAGCAGAAGCTCCACGAG
CAGCTGCTCTGGTGGATCGCCTTGGAACGTACTTGGCGCTGGTGGTCTTC
GCATCGCTTCACATCATGAATGATTTGCGATGTTCAATATACGCGTGAGA
AGATCGTGTCACGGAATCATTTCATGATTCCAGGTGGCAGCTTTCTAGAA
CATTCGTTTGGCCGCCGGGGCCAGTAGTGGCTATCTATCATATCATATCT
AATTCACAACTAGCTAGGATCTGCATGACTATGGCTGGAATTGCCAAAAA
AGCCGG
UFO05505.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stet-RA | 1898 | CG33166-RA | 170..1160 | 8..986 | 4640 | 98.7 | Plus |
| stet-RB | 2380 | CG33166-RB | 653..1642 | 9..986 | 4635 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1476582..1476995 | 651..238 | 2070 | 100 | Minus |
| 3L | 28110227 | 3L | 1476200..1476523 | 966..651 | 1225 | 96.9 | Minus |
| 3L | 28110227 | 3L | 1477050..1477287 | 246..9 | 1160 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:06:36 has no hits.
UFO05505.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:34 Download gff for
UFO05505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stet-RA | 155..1150 | 1..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:55 Download gff for
UFO05505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stet-RA | 165..1160 | 1..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:50 Download gff for
UFO05505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stet-RA | 165..1160 | 1..986 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:50 Download gff for
UFO05505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1476221..1476522 | 652..947 | 98 | <- | Minus |
| 3L | 1476582..1476993 | 240..651 | 100 | <- | Minus |
| 3L | 1477057..1477294 | 1..239 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:55 Download gff for
UFO05505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1476221..1476522 | 652..947 | 98 | <- | Minus |
| arm_3L | 1476582..1476993 | 240..651 | 100 | <- | Minus |
| arm_3L | 1477057..1477294 | 1..239 | 98 | | Minus |
