UFO05506.5prime Sequence
1038 bp (909 high quality bases) assembled on 2009-07-15
> UFO05506.5prime
CAGTCGACATGAAGGAACAGCCGCTAAAGGAGATCACACAGCTCATCCAC
GCCATCAAAGTGGGGCTGGTGGAGGGATCCTACAACATAACCAACAAGAC
GCTGGACATCTTCAAGTACATCATCATGAGCAAGAGCTGGCAGAACGCCG
ATGCTCTCATGCAGATTGTGCGCGACCAGTGTAAGATCCTGCAGGCAGCT
CTGCCCCAGGAGACGGTTACCTCGAACATTGCCAGGCGGATCCTCAAGCT
GACTCGCGAGGAGTTCGATCTGTTGCACGCCAAGGTGCAACACTTCGCGG
ACGACTCACAGGCCTCGCTGTCGCTTCACAAGCTAGTCACGCAGACCAGC
GAGAGCAACGTCAGCGTAGATTACTCGGTGCCCCAGCATGGATTGCGGGA
AGCGCTGCTCGACCACCTGCAGGAGGTGGAAACGGAGCTGGAGACCAGTT
CGGAGAACATCTGCGTCCAGGCCGAGGAGCACATCCATTCGTCGGAGATC
ATCTTGACACTGGGACACTCGCGCAGCGTCGAGAATTTCCTCAAAAGGGC
GATCAAAAAGCGTCAGTTTCTCACCATCATCGTAGCCGAATGTGCGCCAG
CCTGCCGGGGTCACAATTTGGCCGCCAGCTTGGCCAACGAGAAGAATGTG
GAGATTGTTGTGATCCCAGATGCGGCCATCTTCGCTATGATGTCGCGCGT
CAACAAGGTAATAATCGGTACGCACAGCGTGCTGGCTAATGGAGGACTCA
GAGCGGCGTGTGAGCGTATACAGTGCCCTGGCCGCCAAGCATTACTCCGT
GCCGGTCATTGTACTGGCGCCCATGTACAAACTCTCACATTGCATCTGTG
CGAGCAGACGCCTTCATATGGTCGGCTGTGCGAGATGTGATACCTACGAT
TCGATCAGCGCGCGAGCAGTATACAGTCCATGTTCGACTACTGCCTCCGA
CTGTCACCCTTTTCATATCAACACCGTGCATGCCCCCTCGTTTGTGTACC
GCCCTCCTACGACTGATCATCCGAAGATTGGAATGCAG
UFO05506.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF2B-beta-RA | 1357 | CG2677-RA | 148..1195 | 9..1029 | 4555 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2704993..2705450 | 152..609 | 2290 | 100 | Plus |
| X | 23542271 | X | 2705539..2705818 | 608..882 | 1150 | 98.2 | Plus |
| X | 23542271 | X | 2704836..2704923 | 64..151 | 440 | 100 | Plus |
| X | 23542271 | X | 2704718..2704774 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:11:17 has no hits.
UFO05506.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:35 Download gff for
UFO05506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-beta-RA | 134..1182 | 1..1022 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:55 Download gff for
UFO05506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-beta-RA | 139..1187 | 1..1022 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:32 Download gff for
UFO05506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-beta-RA | 139..1187 | 1..1022 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:32 Download gff for
UFO05506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2704709..2704773 | 1..64 | 93 | -> | Plus |
| X | 2704837..2704923 | 65..151 | 100 | -> | Plus |
| X | 2704993..2705449 | 152..608 | 100 | -> | Plus |
| X | 2705540..2705925 | 609..974 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:55 Download gff for
UFO05506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2598742..2598806 | 1..64 | 93 | -> | Plus |
| arm_X | 2598870..2598956 | 65..151 | 100 | -> | Plus |
| arm_X | 2599026..2599482 | 152..608 | 100 | -> | Plus |
| arm_X | 2599573..2599958 | 609..974 | 94 | -> | Plus |
