UFO05507.5prime Sequence
1119 bp (1009 high quality bases) assembled on 2009-07-15
> UFO05507.5prime
CAGTCGACATGTCGAAGGCCCATCCCCCAGAGGTGAAAAAATACATGGAC
AAGCGCATGATGCTGAAACTGAACGGCGGACGCGCGGTGACCGGTATTTT
GCGAGGCTTCGATCCCTTCATGAACGTGGTCCTGGACGACACGGTGGAGG
AGTGCAAGGACAACACGAAGAACAACATCGGCATGGTGGTTATCCGCGGC
AACAGCATCGTCATGGTGGAGGCCCTGGACAGGGTCGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCG
TAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTC
GTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAA
CGGTGTAACAAGGGTGACACTATCCCATATCACAGCTCACCGTCTTTCAT
TGCATACGAATTCCGGATGAGCATTCATCAGCGGGCAGATGTGATAAAGC
GGATAAACTTGTGCTTATTTTTTCTTACGTCTTTAAAAGCGTATATCCAG
CTGACGGTCTGTTATAGTACTGAGCACTGACTGAATGCCTCAATGTTCTT
TACGATGCATGGAATATACACGGTGTATTCAATGATTTTTTTTCTCATAG
CTCTAGTCTGAGATCCTAC
UFO05507.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmG-RB | 432 | CG9742-RB | 83..310 | 9..236 | 1140 | 100 | Plus |
| SmG-RA | 483 | CG9742-RA | 83..310 | 9..236 | 1140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16640091..16640240 | 190..41 | 750 | 100 | Minus |
| X | 23542271 | X | 16639983..16640031 | 236..188 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:57:32 has no hits.
UFO05507.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:36 Download gff for
UFO05507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmG-RA | 70..308 | 1..242 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:46 Download gff for
UFO05507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmG-RA | 76..314 | 1..242 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:37 Download gff for
UFO05507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmG-RA | 76..314 | 1..242 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:37 Download gff for
UFO05507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16639983..16640030 | 189..236 | 100 | <- | Minus |
| X | 16640093..16640240 | 41..188 | 100 | <- | Minus |
| X | 16640306..16640344 | 1..40 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:46 Download gff for
UFO05507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16534016..16534063 | 189..236 | 100 | <- | Minus |
| arm_X | 16534126..16534273 | 41..188 | 100 | <- | Minus |
| arm_X | 16534339..16534377 | 1..40 | 92 | | Minus |
