UFO05508.5prime Sequence
949 bp (796 high quality bases) assembled on 2009-07-15
> UFO05508.5prime
CAGTCGACATGCGTTGCTACAAGCGCGTAGACTCCCCGCCGCCCTACTCG
GATCCATTCGCCACCGCTCCTCCAGCGGAGGACGTCATGCAGCAGAACCT
GGCGTCGCCCGCACATCCCAATCCGGTGATACCCGTGATGGCCCAAACCA
TGCCGGTGTTGCAGCCCGTAAGCGTGATGCATCACCAGACGACAGTGCTG
GTGGACAATACCCGCCAGGGAACGATCTGTCCCCACTGCAACGCTCGGAT
TCGCCTTCGCGTGGAGCACCATCCTACCGGATCAACTTACTGTATGGCGG
CGTTGCTCTGCCTATTCCTATGCTGGCCCTGCGTCTGCGCCCCTTGCTGC
TGCAACTGTTGCTACAAGACCTCCCAGTACTGTCCCAACTGCAACTCCTG
CTTGGGTTCGTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCCGCCAG
CGCATCAGCACCTTGTCCGCCTTGCGTATAATATTTGCCCATGTGAAACC
GGGGGCGAGAGTGTCCATATGCCACGTTTAATCAAACTGTGAACTCCACC
CAGGATGCTGAAACGAAAACATATCTCCAATAAACCCTTAGGAATAGCCA
GTTTCACCGTACCGCCCACTCTTGCAATTATGTGTAGAAACCTGCCGAT
UFO05508.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42565-RB | 2577 | CG42565-RB | 1945..2350 | 8..413 | 2030 | 100 | Plus |
| CG42565-RA | 700 | CG42565-RA | 68..473 | 8..413 | 2030 | 100 | Plus |
| CG13511-RB | 2577 | CG13511-RB | 1945..2350 | 8..413 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22660550..22660861 | 8..319 | 1560 | 100 | Plus |
| 2R | 25286936 | 2R | 22661069..22661162 | 320..413 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:28:43 has no hits.
UFO05508.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:37 Download gff for
UFO05508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13512-RA | 68..478 | 8..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:10 Download gff for
UFO05508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42565-RA | 68..478 | 8..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:00 Download gff for
UFO05508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13511-RB | 1945..2355 | 8..418 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:00 Download gff for
UFO05508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22660550..22660861 | 8..319 | 100 | -> | Plus |
| 2R | 22661069..22661162 | 320..413 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:10 Download gff for
UFO05508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18548055..18548366 | 8..319 | 100 | -> | Plus |
| arm_2R | 18548574..18548667 | 320..413 | 100 | == | Plus |
