UFO05509.5prime Sequence
987 bp (875 high quality bases) assembled on 2009-07-15
> UFO05509.5prime
CAGTCGACATGTTCAAATTTGTTGCTGTCATCGCTCTCCTGGTCGCCACC
GCCAGTGCTGGTCTCATCGAGACTCACCATGTGGTGCACGAGCCCGTTCT
GGCCAAGGTTGGATCGGTGGTGCACTCTGCTCCCTCGGCGGTTTCCCACC
AGAGCATCACCCAGGTGCACAGCAAGGCGGTGGTGCAGCCAGTGGTTGCT
CCCATCGTGAAGACCACCACCTACTCCCATCCCGCCGTTGCCGTCCACGC
TGCTCCAGTGGTTCACTCCGTGCCCGTTGTCCACGCCGCTCCAGTCGTCC
ACTCTGTGCCTCTGGTCCACTCAGCTCCCCTCGTCAAGTCGGTGGTGCAC
TCCGCTCCCCTGGCCTACACCCTGCACCACGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATAT
TTGCCCATGGTGAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTT
AAATCAAACTGTGAAACTCACCCAGGGATTGCTGAGACGAAAAACATATT
CTCATAAACCCTTTAGGGAATAGCAGTTTTCACCGTACACGCCACATCTT
GCGAATATATTGTGTAGAACTGCGAATCGTCGTGCATCACTCCGAGCGAT
GAAACGTTTCAGTGCTCATGAACGGGTACAGTGAACA
UFO05509.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13041-RA | 513 | CG13041-RA | 68..439 | 9..380 | 1860 | 100 | Plus |
| CG13060-RA | 539 | CG13060-RA | 71..473 | 9..390 | 1435 | 91.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16319028..16319387 | 380..21 | 1800 | 100 | Minus |
| 3L | 28110227 | 3L | 16320004..16320281 | 27..304 | 1345 | 98.9 | Plus |
| 3L | 28110227 | 3L | 16320316..16320388 | 318..390 | 275 | 91.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:40 has no hits.
UFO05509.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:38 Download gff for
UFO05509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13041-RA | 54..437 | 1..385 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:59 Download gff for
UFO05509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13041-RA | 60..443 | 1..385 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:32 Download gff for
UFO05509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13041-RA | 60..443 | 1..385 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:32 Download gff for
UFO05509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16319028..16319387 | 21..380 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:59 Download gff for
UFO05509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16312128..16312487 | 21..380 | 100 | <- | Minus |
