UFO05510.5prime Sequence
1048 bp (909 high quality bases) assembled on 2009-07-15
> UFO05510.5prime
CAGTCGACATGCGTCTGCTTTGGTTGCTTGCCACGCTGGTGGCTCTAACA
AGTGCTGGTATCCTTAAGGACTCTCCCAAAGAGCGTTATGATAACTTCAG
GGTATACAAGCTCACTATCCAGAACAAAATTCAATTGGCTGCGATCGAGA
AAATTGGCGAGCTAACGAAGAAGTACAATATTTGGAAGGAGTATGACGAG
CGAAGTAGGCAGATTGATATTATGGTTAGTCCTGGAGAACTTAACCACTT
TCAGGAGCTGCTTAAATTCAATAATATCAGCAGTGAGCTTATGATCGAGA
ATGTCCAAGAGCGTATCGACGAGGAGCAAGTCACGCCGACTGCAGATAGC
GCCACCTTCGGCTGGACGAAGTACTACGAGCTGGAAGAGATTGAGGCCTG
GCTGGACGAGATTCTAAATGCTTATCCCTCGGTGACCGAGGAGTTCATTG
TTGGCAAGTCCTACGAGGGGAGAACCATTAGAGGCATTAAGATCTCCCAC
AAGGCTGGCAATCCTGGCATTTTCATCGAGTCCAACATTCATGCCAGAGA
ATGGATAACTTCGGCCAGTGCTACATGGTTCATCAATCAGCTTTTGACCT
CAGAGGATGCCGATGTGCGAAGTTTGGCCGATAACTATGATTGGCATATA
ATTCCCGTGTTCAATGTAGATGGTTTTGAGTACTCACACAAGAACGATCG
TATGTGGCGCAAAACACGTCAGCCACATGCCACGAATGCATGCATTGGAG
CTGACGCCAATAGGAACTTCGACTCCTATTGGCTCCAGAACAATGGAGCC
TCTGACATCCCTGCAGTGAGACTTTTGCTGGGGATACCCTGAATCTGAGC
CTGAGCCATGCCTTGGTCGAGTACTTGACCAAATCCAGACCAATAGTGTG
TACATATCTCACTCATATGGACAGTATTTGCTTCGCCCTACGTCATACCC
ATGGAGGAGTTCCCAGAAATACATGAATCTGACTATTGGCAAGCTTTGCG
GATGCAATGAGCCCTGCCGTACGACGGCTAACAGATGTTCTACGCGTG
UFO05510.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18585-RB | 1423 | CG18585-RB | 19..1054 | 9..1023 | 4550 | 97.2 | Plus |
| CG18585-RA | 1358 | CG18585-RA | 19..1054 | 9..1023 | 4550 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7690173..7690556 | 694..311 | 1920 | 100 | Minus |
| 2L | 23513712 | 2L | 7690879..7691043 | 173..9 | 825 | 100 | Minus |
| 2L | 23513712 | 2L | 7689822..7690107 | 969..696 | 800 | 93.4 | Minus |
| 2L | 23513712 | 2L | 7690682..7690821 | 311..172 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:30 has no hits.
UFO05510.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:23 Download gff for
UFO05510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18585-RA | 9..1033 | 1..1008 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:09 Download gff for
UFO05510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18585-RA | 13..1037 | 1..1008 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:23 Download gff for
UFO05510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18585-RA | 13..1037 | 1..1008 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:23 Download gff for
UFO05510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7689789..7690107 | 696..996 | 93 | <- | Minus |
| 2L | 7690172..7690556 | 311..695 | 99 | <- | Minus |
| 2L | 7690683..7690819 | 174..310 | 100 | <- | Minus |
| 2L | 7690879..7691049 | 1..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:09 Download gff for
UFO05510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7689789..7690107 | 696..996 | 93 | <- | Minus |
| arm_2L | 7690172..7690556 | 311..695 | 99 | <- | Minus |
| arm_2L | 7690683..7690819 | 174..310 | 100 | <- | Minus |
| arm_2L | 7690879..7691049 | 1..173 | 97 | | Minus |
