UFO05511.5prime Sequence
1061 bp (954 high quality bases) assembled on 2009-07-15
> UFO05511.5prime
CAGTCGACATGTCGACGGAGCCATCGGTGGCCAAGGATGCTGTGCTGAAG
CGCAGCGAGGCTCTGGCGGAAAACACGCCCCAAGTTAGTGGCTACGATTT
CAACGAAGGCTTAGACTACAGTAAGCTCTTCGAATCCTATGTGAACACCG
GGTTTCAGGCCACGAATCTTGGCCTGGCCATTCGGGAAATTAACAGAATG
CTGGATTGCAGGGACCAGCCATTGGAAGCGGACCAAATAGACAGCCATGA
AACAGACGACTTCATCCGTCGAAGAAGCAAGTGCACCGTATTTTTGGGCT
ACACATCCAACTTGGTTTCGTCCGGACTGCGAGAGACCATTCGCTTTCTG
GCCGAGCACCGTATGATCGACTGCATTGTGACCACAGCTGGCGGCGTCGA
GGAGGACTTCATCAAGTGCTTGGCTCCCACGTTCATGGGTTCATTTGAGC
TGAGTGGCAGGGATCTCCGCGAGCGTGGAATCAACAGAATTGGCAACCTT
CTGGTGCCGAACGATAATTACTGTAAGTTCGAGGACTGGGTGATGCCGCT
GCTGGACGAGATGCTGGAGGAGCAAAAATCCCAGGGAACTATCTGGTCGC
CGTCGAAGATTATTCATCGGTTGGGCGAACGGATTGGCGATCCTAGTTCC
ATTTACTATTGGGCTGCCAAGAATCAAATACCAGTCTTTTGTCCCGCCTT
GACGGATGGCAGTCTGGGCGACATGATGTACTTTCACTCCTTTCGACAAC
CTGGACTCGTGGTGGACATTCTGTCCGATCTGCGGAGGCTCAACACCATG
GCTGTCAAGGCGGTCAACAGCGGGATGATCATCGTGGCGGCGGCGTTATC
AGCATCACATTTGTAATGCCAATCTGATGCGCAATGGAGCGGATTACTCA
GTGTCATTATACTGCCTCGGAGTTTGACGCAGCGATAGCGCGCTCGACCG
ATGAGCTATATCGTGGGGCAGATCAGAGATGCACCCTGTAGGTGTATGCC
GAGGCTAGCTTGTCTTTCGTGATGTGGGTGAACCATCGCAAGCGCATCTG
CCTGCAAGAGC
UFO05511.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8005-RA | 1227 | CG8005-RA | 86..1133 | 9..1036 | 4745 | 98 | Plus |
| CG8005-RB | 1216 | CG8005-RB | 86..1122 | 9..1036 | 4570 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8198541..8199319 | 200..970 | 3495 | 99 | Plus |
| 3L | 28110227 | 3L | 8198292..8198483 | 9..200 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:02:29 has no hits.
UFO05511.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:24 Download gff for
UFO05511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 84..1131 | 9..1036 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:50 Download gff for
UFO05511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 86..1133 | 9..1036 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:02 Download gff for
UFO05511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 86..1133 | 9..1036 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:02 Download gff for
UFO05511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8198292..8198483 | 9..200 | 100 | -> | Plus |
| 3L | 8198542..8199397 | 201..1036 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:50 Download gff for
UFO05511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8191392..8191583 | 9..200 | 100 | -> | Plus |
| arm_3L | 8191642..8192497 | 201..1036 | 97 | | Plus |
