UFO05512.5prime Sequence
1038 bp (924 high quality bases) assembled on 2009-07-15
> UFO05512.5prime
CAGTCGACATGAATATAAATCTGCCGAATTTCAATGTGAAGAACCTGGTG
AAGGAGGCGGGCAGCACAATATCACGAGTGGTGCAGCTCACGGAGGAGAA
ACTGGGCACCACGGAGCGCACCGAGTACGACTTGCACTTCCAGAATCTCG
CCGAGCGGGCTGATGTGACCAAGACATGGACGGAGAAGATAGTGCGCGAC
ACAGAGTCGGTGCTGATACCCAATCCTCAGAACCGGGTCGAAGACTTCAT
CTTCGAGAAGATTGAAAAGTCGAAGCCAAAAAGGTTGAGCAACCTAGAGC
ACCTGGCTCTGGACATGATCGAGGCTGGGGGCGATTTCGGGCAGGATTTA
CCCTATGGTCAGGCTCTGATCAAGGTCGGCCAAGCGGAACAGAAACTGGG
CCAGTGCGAGCACGACTTTATAGCCACCTCGGGCATTTGCTTTACACAGC
CGTTGCGCAAGTTCCTAGACGGCGAAATGAAGACAATTGGCAAGGAGCGA
GGCATCCTGGAGACCAAGCGCCTGGATCTGGACGCCTGCAAGAACAGGGT
GAAGAAAGCGCGCAGCATGCTGGGTCAGCAATCGAAAGATGGCATCTCGC
CAGAGGCCGTCTTGGAACAGGCGGAACGGGACTTGCGGGTGGCTCACGCC
GAGTTCGACCGGCAGGCGGAGATTACCAAGCTGCTGCTGGACGGGATCAG
CACATCGCAGCATCTCATTTGCGCCACTTGCACGCCTTCATCCAGACGCA
AGTGCGCTACTACAAGCAGTGCGGCGATGTCATGCAGCAGCTGCAGCGTG
AACTGACAACTTGGGAGGCCCCACGCCATACATTCCGCTCGACGTGACGA
GCCAGTGCCAGCAAGTCCAACATATCGTCCGAGCGCAGCCCGTGTCTGCA
ACATCACTCTGCAATATGGCTGCACGCACAGCCTATCAGCCCATGCACGT
CAGCACGATCAGATGCAGAGGCACGCGTCTTTGCTCCTACGACCCAGATC
ACCCGAGCTATTGAACGCCAATGAGGTGATCTTCTGAC
UFO05512.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoB-RA | 2226 | CG9834-RA | 114..1166 | 9..1034 | 4560 | 97.1 | Plus |
| EndoB-RC | 2190 | CG9834-RC | 114..911 | 9..805 | 3935 | 99.6 | Plus |
| EndoB-RD | 2154 | CG9834-RD | 114..689 | 9..584 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19309816..19310316 | 584..84 | 2505 | 100 | Minus |
| 2R | 25286936 | 2R | 19309398..19309585 | 805..619 | 860 | 98.4 | Minus |
| 2R | 25286936 | 2R | 19310475..19310552 | 86..9 | 390 | 100 | Minus |
| 2R | 25286936 | 2R | 19308740..19308813 | 881..810 | 270 | 97.3 | Minus |
| 2R | 25286936 | 2R | 19309662..19309699 | 621..584 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:02:35 has no hits.
UFO05512.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:26 Download gff for
UFO05512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RA | 141..1198 | 9..1038 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:55 Download gff for
UFO05512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RA | 114..1171 | 9..1038 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:04 Download gff for
UFO05512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoB-RA | 114..1171 | 9..1038 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:04 Download gff for
UFO05512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19309393..19309583 | 621..809 | 97 | <- | Minus |
| 2R | 19309663..19309698 | 585..620 | 100 | <- | Minus |
| 2R | 19309816..19310313 | 87..584 | 100 | <- | Minus |
| 2R | 19310475..19310552 | 9..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:55 Download gff for
UFO05512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15196898..15197088 | 621..809 | 97 | <- | Minus |
| arm_2R | 15197168..15197203 | 585..620 | 100 | <- | Minus |
| arm_2R | 15197321..15197818 | 87..584 | 100 | <- | Minus |
| arm_2R | 15197980..15198057 | 9..86 | 100 | | Minus |
